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Chlorine in PDB 2yf9: Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Native Form

Enzymatic activity of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Native Form

All present enzymatic activity of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Native Form:
3.6.1.19;

Protein crystallography data

The structure of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Native Form, PDB code: 2yf9 was solved by A.M.D.Goncalves, D.De Sanctis, S.M.Mcsweeney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.683 / 1.90
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 62.925, 62.925, 167.578, 90.00, 90.00, 120.00
R / Rfree (%) 18.83 / 22.52

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Native Form (pdb code 2yf9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Native Form, PDB code: 2yf9:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 2yf9

Go back to Chlorine Binding Sites List in 2yf9
Chlorine binding site 1 out of 4 in the Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Native Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Native Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1144

b:24.6
occ:1.00
 HE2 A:HIS18 2.2 17.0 1.0
HH12 A:ARG40 2.3 13.4 1.0
HH22 A:ARG40 2.3 23.7 1.0
HA3 A:GLY89 2.8 10.1 1.0
NE2 A:HIS18 3.1 17.0 1.0
NH1 A:ARG40 3.2 13.4 1.0
NH2 A:ARG40 3.2 23.7 1.0
HE2 A:PHE17 3.3 14.3 1.0
HA A:VAL86 3.6 13.4 1.0
HD13 A:LEU14 3.6 14.8 1.0
HD12 A:LEU14 3.6 14.8 1.0
CZ A:ARG40 3.6 21.4 1.0
CA A:GLY89 3.8 10.1 1.0
HA2 A:GLY89 3.8 10.1 1.0
HD2 A:PHE17 3.9 17.4 1.0
CE1 A:HIS18 3.9 15.6 1.0
HG13 A:VAL86 3.9 23.0 1.0
HE1 A:HIS18 3.9 15.6 1.0
HH11 A:ARG40 4.0 13.4 1.0
HH21 A:ARG40 4.1 23.7 1.0
CD2 A:HIS18 4.1 17.5 1.0
CD1 A:LEU14 4.1 14.8 1.0
HD2 A:TYR85 4.2 11.5 1.0
CE2 A:PHE17 4.2 14.3 1.0
HD2 A:HIS18 4.3 17.5 1.0
HD22 A:LEU43 4.4 31.4 1.0
CD2 A:PHE17 4.4 17.4 1.0
C A:GLY89 4.5 13.2 1.0
O A:TYR85 4.5 13.9 1.0
HD11 A:LEU14 4.6 14.8 1.0
CA A:VAL86 4.7 13.4 1.0
HE2 A:TYR85 4.7 10.7 1.0
H A:GLY89 4.7 11.7 1.0
O A:GLY89 4.8 16.9 1.0
N A:GLY89 4.8 11.7 1.0
CG1 A:VAL86 4.9 23.0 1.0
HB A:VAL86 5.0 19.6 1.0
HD12 A:ILE21 5.0 28.2 1.0
NE A:ARG40 5.0 18.1 1.0
CD2 A:TYR85 5.0 11.5 1.0
HD21 A:LEU43 5.0 31.4 1.0

Chlorine binding site 2 out of 4 in 2yf9

Go back to Chlorine Binding Sites List in 2yf9
Chlorine binding site 2 out of 4 in the Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Native Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Native Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1145

b:38.4
occ:1.00
 OE2 A:GLU139 3.3 33.1 1.0
HH22 A:ARG135 3.4 29.9 1.0
HH21 A:ARG135 3.5 29.9 1.0
NH2 A:ARG135 3.6 22.9 1.0
CD A:GLU139 4.2 41.2 1.0
OE1 A:GLU139 4.3 43.1 1.0
CZ A:ARG135 4.7 26.4 1.0

Chlorine binding site 3 out of 4 in 2yf9

Go back to Chlorine Binding Sites List in 2yf9
Chlorine binding site 3 out of 4 in the Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Native Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Native Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1146

b:24.2
occ:1.00
 H A:LYS125 2.2 15.7 1.0
O A:HOH2118 2.9 35.1 1.0
HA A:LEU124 2.9 16.9 1.0
HG3 A:LYS125 3.0 17.9 1.0
HD2 A:LYS125 3.0 17.2 1.0
O A:HOH2124 3.1 29.1 1.0
N A:LYS125 3.2 15.7 1.0
HD23 A:LEU124 3.3 22.2 1.0
HB2 A:LYS125 3.4 18.3 1.0
HB3 A:LEU124 3.5 13.7 1.0
HD21 A:LEU124 3.6 22.2 1.0
CG A:LYS125 3.7 17.9 1.0
CA A:LEU124 3.7 16.9 1.0
CD A:LYS125 3.8 17.2 1.0
CB A:LYS125 3.9 18.3 1.0
C A:LEU124 3.9 14.6 1.0
HE3 A:LYS125 3.9 26.8 1.0
CD2 A:LEU124 3.9 22.2 1.0
CB A:LEU124 4.1 13.7 1.0
CA A:LYS125 4.1 13.8 1.0
CE A:LYS125 4.4 26.8 1.0
HZ3 A:LYS125 4.6 28.8 1.0
O A:GLN123 4.6 20.7 1.0
HG2 A:LYS125 4.7 17.9 1.0
HD3 A:LYS125 4.7 17.2 1.0
CG A:LEU124 4.7 17.4 1.0
HE3 A:LYS112 4.7 30.1 1.0
HD22 A:LEU124 4.8 22.2 1.0
HA A:LYS125 4.9 13.8 1.0
O A:LYS125 4.9 16.6 1.0
N A:LEU124 5.0 16.4 1.0
HB3 A:LYS125 5.0 18.3 1.0

Chlorine binding site 4 out of 4 in 2yf9

Go back to Chlorine Binding Sites List in 2yf9
Chlorine binding site 4 out of 4 in the Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Native Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Native Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1147

b:31.7
occ:1.00
 H A:LEU68 2.3 17.2 1.0
HE21 A:GLN62 2.4 23.3 1.0
HA A:ALA67 2.9 23.9 1.0
HG2 A:GLN62 3.0 18.9 1.0
HG A:LEU68 3.2 20.3 1.0
N A:LEU68 3.2 17.2 1.0
NE2 A:GLN62 3.3 23.3 1.0
HB2 A:LEU68 3.4 17.7 1.0
HD13 A:LEU68 3.6 21.5 1.0
O A:GLU66 3.8 17.5 1.0
CA A:ALA67 3.8 23.9 1.0
HE22 A:GLN62 3.9 23.3 1.0
O A:HOH2074 4.0 31.7 1.0
CG A:LEU68 4.0 20.3 1.0
CB A:LEU68 4.0 17.7 1.0
C A:ALA67 4.0 26.7 1.0
CG A:GLN62 4.0 18.9 1.0
CD A:GLN62 4.2 23.0 1.0
CA A:LEU68 4.2 19.9 1.0
CD1 A:LEU68 4.3 21.5 1.0
O A:HOH2073 4.4 42.5 1.0
HG3 A:GLN62 4.5 18.9 1.0
HB2 A:ALA67 4.5 25.0 1.0
C A:GLU66 4.6 18.8 1.0
N A:ALA67 4.7 18.2 1.0
O A:LEU68 4.7 25.9 1.0
CB A:ALA67 4.7 25.0 1.0
HD12 A:LEU68 4.7 21.5 1.0
O A:HOH2035 4.8 31.2 1.0
HA A:GLN62 4.9 17.3 1.0
HB3 A:LEU68 5.0 17.7 1.0
C A:LEU68 5.0 25.9 1.0

Reference:

A.M.D.Goncalves, D.Desanctis, S.M.Mcsweeney. Structural and Functional Insights Into DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans. J.Biol.Chem. V. 286 30691 2011.
ISSN: ISSN 0021-9258
PubMed: 21733847
DOI: 10.1074/JBC.M111.247999
Page generated: Sat Jul 20 14:59:46 2024

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