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Chlorine in PDB 2yfd: Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump

Enzymatic activity of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump

All present enzymatic activity of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump:
3.6.1.19;

Protein crystallography data

The structure of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump, PDB code: 2yfd was solved by A.M.D.Goncalves, D.De Sanctis, S.M.Mcsweeney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.934 / 1.77
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.090, 149.529, 52.376, 90.00, 90.00, 90.00
R / Rfree (%) 18.43 / 21.14

Other elements in 2yfd:

The structure of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump (pdb code 2yfd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump, PDB code: 2yfd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2yfd

Go back to Chlorine Binding Sites List in 2yfd
Chlorine binding site 1 out of 2 in the Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1148

b:48.4
occ:1.00
 HE2 A:HIS18 1.9 19.8 1.0
HH12 A:ARG40 2.1 19.9 1.0
O A:HOH2024 2.5 26.5 1.0
NE2 A:HIS18 2.8 19.8 1.0
HH22 A:ARG40 3.0 14.7 1.0
NH1 A:ARG40 3.1 19.9 1.0
HE2 A:PHE17 3.4 23.6 1.0
CD2 A:HIS18 3.7 19.2 1.0
HD2 A:HIS18 3.7 19.2 1.0
HH11 A:ARG40 3.8 19.9 1.0
NH2 A:ARG40 3.8 14.7 1.0
HA3 A:GLY89 3.8 10.5 1.0
CE1 A:HIS18 3.9 17.0 1.0
CZ A:ARG40 3.9 16.2 1.0
HD2 A:PHE17 4.0 20.1 1.0
HE1 A:HIS18 4.1 17.0 1.0
HD13 A:LEU14 4.1 13.3 1.0
O A:HOH2059 4.1 45.2 1.0
HD12 A:LEU14 4.1 13.3 1.0
CE2 A:PHE17 4.3 23.6 1.0
HD11 A:LEU43 4.3 23.2 1.0
HD12 A:ILE21 4.4 27.2 1.0
HA2 A:GLY89 4.5 10.5 1.0
CD2 A:PHE17 4.6 20.1 1.0
CD1 A:LEU14 4.6 13.3 1.0
CA A:GLY89 4.6 10.5 1.0
HH21 A:ARG40 4.7 14.7 1.0
HG3 A:GLN93 4.8 22.5 1.0
HA A:VAL86 4.8 10.7 1.0
HD12 A:LEU43 4.8 23.2 1.0
HD2 A:TYR85 4.8 11.0 1.0
HD11 A:LEU14 4.8 13.3 1.0
CG A:HIS18 4.9 18.4 1.0
HD11 A:ILE21 4.9 27.2 1.0
ND1 A:HIS18 4.9 20.1 1.0
CD1 A:LEU43 5.0 23.2 1.0
HE2 A:TYR85 5.0 12.3 1.0
HD13 A:LEU43 5.0 23.2 1.0

Chlorine binding site 2 out of 2 in 2yfd

Go back to Chlorine Binding Sites List in 2yfd
Chlorine binding site 2 out of 2 in the Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1146

b:30.5
occ:1.00
 HB1 D:ALA24 2.6 19.4 1.0
HD13 D:LEU36 2.7 14.6 1.0
O D:HOH2072 2.7 16.7 1.0
HE22 D:GLN93 2.8 15.0 1.0
HB3 D:ALA24 3.1 19.4 1.0
H D:ALA24 3.3 15.8 1.0
CB D:ALA24 3.4 19.4 1.0
HB2 D:LEU36 3.4 11.9 1.0
NE2 D:GLN93 3.5 15.0 1.0
CD1 D:LEU36 3.7 14.6 1.0
HE21 D:GLN93 3.8 15.0 1.0
HG D:LEU36 3.9 17.4 1.0
N D:ALA24 4.1 15.8 1.0
HB2 D:ALA24 4.1 19.4 1.0
CG D:LEU36 4.2 17.4 1.0
HD12 D:LEU36 4.2 14.6 1.0
CB D:LEU36 4.2 11.9 1.0
CD D:GLN93 4.3 16.5 1.0
CA D:ALA24 4.4 16.7 1.0
HA D:LEU36 4.4 12.0 1.0
HD11 D:LEU36 4.4 14.6 1.0
OE1 D:GLN93 4.5 15.0 1.0
HG2 D:PRO33 4.7 13.4 1.0
HB3 D:GLN93 4.7 12.2 1.0
HD2 D:PRO33 4.8 17.0 1.0
HB2 D:ALA23 4.9 12.3 1.0
CA D:LEU36 4.9 12.0 1.0

Reference:

A.M.D.Goncalves, D.Desanctis, S.M.Mcsweeney. Structural and Functional Insights Into DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans. J.Biol.Chem. V. 286 30691 2011.
ISSN: ISSN 0021-9258
PubMed: 21733847
DOI: 10.1074/JBC.M111.247999
Page generated: Sat Jul 20 15:00:14 2024

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