Atomistry » Chlorine » PDB 2ycm-2yj9 » 2yfd
Atomistry »
  Chlorine »
    PDB 2ycm-2yj9 »
      2yfd »

Chlorine in PDB 2yfd: Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump

Enzymatic activity of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump

All present enzymatic activity of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump:
3.6.1.19;

Protein crystallography data

The structure of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump, PDB code: 2yfd was solved by A.M.D.Goncalves, D.De Sanctis, S.M.Mcsweeney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.934 / 1.77
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.090, 149.529, 52.376, 90.00, 90.00, 90.00
R / Rfree (%) 18.43 / 21.14

Other elements in 2yfd:

The structure of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump (pdb code 2yfd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump, PDB code: 2yfd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2yfd

Go back to Chlorine Binding Sites List in 2yfd
Chlorine binding site 1 out of 2 in the Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1148

b:48.4
occ:1.00
 HE2 A:HIS18 1.9 19.8 1.0
HH12 A:ARG40 2.1 19.9 1.0
O A:HOH2024 2.5 26.5 1.0
NE2 A:HIS18 2.8 19.8 1.0
HH22 A:ARG40 3.0 14.7 1.0
NH1 A:ARG40 3.1 19.9 1.0
HE2 A:PHE17 3.4 23.6 1.0
CD2 A:HIS18 3.7 19.2 1.0
HD2 A:HIS18 3.7 19.2 1.0
HH11 A:ARG40 3.8 19.9 1.0
NH2 A:ARG40 3.8 14.7 1.0
HA3 A:GLY89 3.8 10.5 1.0
CE1 A:HIS18 3.9 17.0 1.0
CZ A:ARG40 3.9 16.2 1.0
HD2 A:PHE17 4.0 20.1 1.0
HE1 A:HIS18 4.1 17.0 1.0
HD13 A:LEU14 4.1 13.3 1.0
O A:HOH2059 4.1 45.2 1.0
HD12 A:LEU14 4.1 13.3 1.0
CE2 A:PHE17 4.3 23.6 1.0
HD11 A:LEU43 4.3 23.2 1.0
HD12 A:ILE21 4.4 27.2 1.0
HA2 A:GLY89 4.5 10.5 1.0
CD2 A:PHE17 4.6 20.1 1.0
CD1 A:LEU14 4.6 13.3 1.0
CA A:GLY89 4.6 10.5 1.0
HH21 A:ARG40 4.7 14.7 1.0
HG3 A:GLN93 4.8 22.5 1.0
HA A:VAL86 4.8 10.7 1.0
HD12 A:LEU43 4.8 23.2 1.0
HD2 A:TYR85 4.8 11.0 1.0
HD11 A:LEU14 4.8 13.3 1.0
CG A:HIS18 4.9 18.4 1.0
HD11 A:ILE21 4.9 27.2 1.0
ND1 A:HIS18 4.9 20.1 1.0
CD1 A:LEU43 5.0 23.2 1.0
HE2 A:TYR85 5.0 12.3 1.0
HD13 A:LEU43 5.0 23.2 1.0

Chlorine binding site 2 out of 2 in 2yfd

Go back to Chlorine Binding Sites List in 2yfd
Chlorine binding site 2 out of 2 in the Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structural and Functional Insights of DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans, Complexed with Mg and Dump within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1146

b:30.5
occ:1.00
 HB1 D:ALA24 2.6 19.4 1.0
HD13 D:LEU36 2.7 14.6 1.0
O D:HOH2072 2.7 16.7 1.0
HE22 D:GLN93 2.8 15.0 1.0
HB3 D:ALA24 3.1 19.4 1.0
H D:ALA24 3.3 15.8 1.0
CB D:ALA24 3.4 19.4 1.0
HB2 D:LEU36 3.4 11.9 1.0
NE2 D:GLN93 3.5 15.0 1.0
CD1 D:LEU36 3.7 14.6 1.0
HE21 D:GLN93 3.8 15.0 1.0
HG D:LEU36 3.9 17.4 1.0
N D:ALA24 4.1 15.8 1.0
HB2 D:ALA24 4.1 19.4 1.0
CG D:LEU36 4.2 17.4 1.0
HD12 D:LEU36 4.2 14.6 1.0
CB D:LEU36 4.2 11.9 1.0
CD D:GLN93 4.3 16.5 1.0
CA D:ALA24 4.4 16.7 1.0
HA D:LEU36 4.4 12.0 1.0
HD11 D:LEU36 4.4 14.6 1.0
OE1 D:GLN93 4.5 15.0 1.0
HG2 D:PRO33 4.7 13.4 1.0
HB3 D:GLN93 4.7 12.2 1.0
HD2 D:PRO33 4.8 17.0 1.0
HB2 D:ALA23 4.9 12.3 1.0
CA D:LEU36 4.9 12.0 1.0

Reference:

A.M.D.Goncalves, D.Desanctis, S.M.Mcsweeney. Structural and Functional Insights Into DR2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans. J.Biol.Chem. V. 286 30691 2011.
ISSN: ISSN 0021-9258
PubMed: 21733847
DOI: 10.1074/JBC.M111.247999
Page generated: Sat Jul 20 15:00:14 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy