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Chlorine in PDB 2yfr: Crystal Structure of Inulosucrase From Lactobacillus Johnsonii NCC533

Enzymatic activity of Crystal Structure of Inulosucrase From Lactobacillus Johnsonii NCC533

All present enzymatic activity of Crystal Structure of Inulosucrase From Lactobacillus Johnsonii NCC533:
2.4.1.9;

Protein crystallography data

The structure of Crystal Structure of Inulosucrase From Lactobacillus Johnsonii NCC533, PDB code: 2yfr was solved by T.Pijning, M.A.Anwar, H.Leemhuis, S.Kralj, L.Dijkhuizen, B.W.Dijkstra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 121.63 / 1.75
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 172.007, 172.007, 114.581, 90.00, 90.00, 90.00
R / Rfree (%) 15.095 / 16.958

Other elements in 2yfr:

The structure of Crystal Structure of Inulosucrase From Lactobacillus Johnsonii NCC533 also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Inulosucrase From Lactobacillus Johnsonii NCC533 (pdb code 2yfr). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Inulosucrase From Lactobacillus Johnsonii NCC533, PDB code: 2yfr:

Chlorine binding site 1 out of 1 in 2yfr

Go back to Chlorine Binding Sites List in 2yfr
Chlorine binding site 1 out of 1 in the Crystal Structure of Inulosucrase From Lactobacillus Johnsonii NCC533


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Inulosucrase From Lactobacillus Johnsonii NCC533 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1710

b:39.0
occ:1.00
NZ A:LYS357 2.7 35.3 1.0
OH A:TYR355 3.1 18.9 1.0
NE2 A:GLN338 3.1 16.8 1.0
CE A:LYS357 3.7 32.9 1.0
CE2 A:TYR355 3.8 15.5 1.0
CZ A:TYR355 3.8 16.7 1.0
CG A:GLN338 3.8 14.1 1.0
CD2 A:PHE329 3.9 15.5 1.0
CG A:PHE329 3.9 14.8 1.0
CD A:GLN338 3.9 17.3 1.0
OD2 A:ASP394 4.0 25.7 1.0
CE2 A:PHE329 4.0 16.4 1.0
CD1 A:PHE329 4.0 17.9 1.0
CG2 A:ILE336 4.1 18.4 1.0
CE1 A:PHE329 4.1 17.3 1.0
CZ A:PHE329 4.1 18.3 1.0
CG A:LYS357 4.2 19.6 1.0
CD A:LYS357 4.4 26.6 1.0
CB A:PHE329 4.6 14.3 1.0
CG A:ASP394 4.8 21.9 1.0
OD1 A:ASP394 4.8 21.4 1.0
CD2 A:TYR355 5.0 14.9 1.0
CE1 A:TYR355 5.0 17.4 1.0

Reference:

T.Pijning, M.A.Anwar, M.Boger, J.M.Dobruchowska, H.Leemhuis, S.Kralj, L.Dijkhuizen, B.W.Dijkstra. Crystal Structure of Inulosucrase From Lactobacillus: Insights Into the Substrate Specificity and Product Specificity of GH68 Fructansucrases. J.Mol.Biol. V. 412 80 2011.
ISSN: ISSN 0022-2836
PubMed: 21801732
DOI: 10.1016/J.JMB.2011.07.031
Page generated: Sat Dec 12 09:28:54 2020

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