Chlorine in PDB 2yg8: Structure of An Unusual 3-Methyladenine Dna Glycosylase II (Alka) From Deinococcus Radiodurans

The structure of Structure of An Unusual 3-Methyladenine Dna Glycosylase II (Alka) From Deinococcus Radiodurans, PDB code: 2yg8 was solved by E.Moe, D.R.Hall, I.Leiros, V.Talstad, J.Timmins, S.Mcsweeney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.75 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	108.562, 51.297, 90.458, 90.00, 99.76, 90.00
R / Rfree (%)	15.8 / 20.3

The binding sites of Chlorine atom in the Structure of An Unusual 3-Methyladenine Dna Glycosylase II (Alka) From Deinococcus Radiodurans (pdb code 2yg8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of An Unusual 3-Methyladenine Dna Glycosylase II (Alka) From Deinococcus Radiodurans, PDB code: 2yg8:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Structure of An Unusual 3-Methyladenine Dna Glycosylase II (Alka) From Deinococcus Radiodurans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of An Unusual 3-Methyladenine Dna Glycosylase II (Alka) From Deinococcus Radiodurans within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1226 b:15.0 occ:1.00 O A:HOH2081 2.9 24.6 1.0 O A:HOH2201 3.0 32.9 1.0 NZ A:LYS115 3.1 7.9 1.0 O A:HOH2202 3.1 19.0 1.0 N A:SER112 3.4 7.5 1.0 CD A:LYS115 3.6 8.2 1.0 O A:GLY110 3.7 11.5 1.0 CE A:LYS115 3.7 8.7 1.0 CB A:SER112 3.9 6.4 1.0 OG A:SER112 4.1 3.7 1.0 CD2 A:LEU74 4.1 12.5 1.0 CA A:LEU111 4.2 9.5 1.0 C A:LEU111 4.2 7.9 1.0 CA A:SER112 4.2 6.5 1.0 O A:HOH2110 4.4 31.3 1.0 O A:HOH2083 4.7 19.9 1.0 C A:GLY110 4.7 10.9 1.0 CD1 A:LEU74 4.7 9.6 1.0 CG A:LEU74 4.8 11.2 1.0 CG A:LYS115 4.8 7.2 1.0 O A:HOH2137 4.8 31.4 1.0 O A:ALA70 4.9 10.6 1.0 N A:LEU111 4.9 10.4 1.0 O A:HOH2203 5.0 9.9 1.0

Chlorine binding site 2 out of 4 in the Structure of An Unusual 3-Methyladenine Dna Glycosylase II (Alka) From Deinococcus Radiodurans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of An Unusual 3-Methyladenine Dna Glycosylase II (Alka) From Deinococcus Radiodurans within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1227 b:13.2 occ:1.00 OG1 A:THR158 3.1 11.2 1.0 N A:GLY155 3.1 6.9 1.0 CA A:GLY155 3.3 6.2 1.0 N A:THR158 3.3 5.8 1.0 C A:GLY155 3.6 6.8 1.0 CB A:THR158 3.7 7.0 1.0 O A:GLY155 3.9 6.9 1.0 CB A:TRP157 3.9 7.6 1.0 N A:TRP157 4.0 7.1 1.0 CA A:THR158 4.1 6.2 1.0 N A:ARG156 4.2 7.2 1.0 CA A:TRP157 4.2 7.3 1.0 C A:TRP157 4.3 6.1 1.0 CE3 A:TRP157 4.3 10.1 1.0 C A:ILE154 4.4 6.8 1.0 O A:GLY153 4.8 9.4 1.0 C A:ARG156 4.8 7.4 1.0 CA A:ILE154 4.8 6.4 1.0 CG A:TRP157 4.9 8.4 1.0 CD2 A:TRP157 4.9 8.8 1.0

Chlorine binding site 3 out of 4 in the Structure of An Unusual 3-Methyladenine Dna Glycosylase II (Alka) From Deinococcus Radiodurans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of An Unusual 3-Methyladenine Dna Glycosylase II (Alka) From Deinococcus Radiodurans within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1226 b:14.6 occ:1.00 O B:HOH2172 3.1 21.2 1.0 NZ B:LYS115 3.2 5.8 1.0 N B:SER112 3.4 7.8 1.0 CE B:LYS115 3.6 7.1 1.0 CD B:LYS115 3.6 4.3 1.0 O B:GLY110 3.7 11.4 1.0 CB B:SER112 4.0 7.6 1.0 CD2 B:LEU74 4.1 11.3 1.0 CA B:LEU111 4.1 9.7 1.0 C B:LEU111 4.1 8.9 1.0 OG B:SER112 4.2 3.4 1.0 CA B:SER112 4.2 6.5 1.0 C B:GLY110 4.7 11.3 1.0 CD1 B:LEU74 4.7 10.1 1.0 CG B:LEU74 4.8 11.0 1.0 CG B:LYS115 4.9 5.1 1.0 N B:LEU111 4.9 10.4 1.0 CD1 B:ILE82 4.9 11.7 1.0 O B:ALA70 4.9 9.4 1.0 O B:HOH2120 5.0 29.0 1.0

Chlorine binding site 4 out of 4 in the Structure of An Unusual 3-Methyladenine Dna Glycosylase II (Alka) From Deinococcus Radiodurans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of An Unusual 3-Methyladenine Dna Glycosylase II (Alka) From Deinococcus Radiodurans within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1227 b:14.7 occ:1.00 OG1 B:THR158 3.0 10.1 1.0 N B:GLY155 3.2 8.0 1.0 N B:THR158 3.3 5.7 1.0 CA B:GLY155 3.4 7.9 1.0 CB B:THR158 3.6 6.3 1.0 C B:GLY155 3.6 7.1 1.0 CB B:TRP157 3.9 6.1 1.0 O B:GLY155 3.9 7.0 1.0 N B:TRP157 4.0 5.5 1.0 CA B:THR158 4.1 5.1 1.0 N B:ARG156 4.2 6.7 1.0 CA B:TRP157 4.2 5.8 1.0 CE3 B:TRP157 4.2 7.9 1.0 C B:TRP157 4.2 5.3 1.0 C B:ILE154 4.4 8.2 1.0 C B:ARG156 4.7 6.0 1.0 CG B:TRP157 4.8 6.8 1.0 CA B:ILE154 4.9 7.3 1.0 CD2 B:TRP157 4.9 7.4 1.0 O B:GLY153 4.9 8.8 1.0 O B:HOH2140 5.0 38.6 1.0

E.Moe, D.R.Hall, I.Leiros, V.T.Monsen, J.Timmins, S.Mcsweeney. Structure-Function Studies of An Unusual 3-Methyladenine Dna Glycosylase II (Alka) From Deinococcus Radiodurans. Acta Crystallogr. D Biol. V. 68 703 2012CRYSTALLOGR..
ISSN: ESSN 1399-0047
PubMed: 22683793
DOI: 10.1107/S090744491200947X