Atomistry » Chlorine » PDB 2yc5-2yj8 » 2yhg
Atomistry »
  Chlorine »
    PDB 2yc5-2yj8 »
      2yhg »

Chlorine in PDB 2yhg: Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism

Protein crystallography data

The structure of Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism, PDB code: 2yhg was solved by J.H.Hehemann, C.Marsters, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 62.73 / 1.08
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.580, 61.580, 125.460, 90.00, 90.00, 90.00
R / Rfree (%) 13.3 / 15.1

Other elements in 2yhg:

The structure of Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Zinc (Zn) 1 atom
Magnesium (Mg) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism (pdb code 2yhg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism, PDB code: 2yhg:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2yhg

Go back to Chlorine Binding Sites List in 2yhg
Chlorine binding site 1 out of 2 in the Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1935

b:11.3
occ:1.00
OH A:TYR875 3.1 10.7 1.0
NE A:ARG766 3.2 10.4 1.0
NH1 A:ARG802 3.2 14.7 1.0
MG A:MG1939 3.4 11.0 0.7
CD A:ARG802 3.6 13.3 1.0
CB A:SER799 3.7 8.1 1.0
CD A:ARG766 3.8 8.9 1.0
CE1 A:TYR875 3.9 9.8 1.0
CZ A:TYR875 3.9 9.4 1.0
CB A:ARG766 4.0 7.3 1.0
CZ A:ARG802 4.2 15.3 1.0
CZ A:ARG766 4.2 11.2 1.0
NE A:ARG802 4.3 14.7 1.0
NH2 A:ARG766 4.3 14.4 1.0
CA A:SER799 4.4 8.0 1.0
O A:SER799 4.5 9.1 1.0
CG A:ARG766 4.5 7.5 1.0
OE2 A:GLU877 4.8 17.9 1.0
CB A:GLU877 4.9 12.9 1.0
C A:SER799 4.9 7.2 1.0
CG A:ARG802 4.9 10.3 1.0
OG A:SER799 4.9 8.1 1.0
O A:HOH2390 5.0 31.6 1.0
CD A:GLU877 5.0 16.8 1.0

Chlorine binding site 2 out of 2 in 2yhg

Go back to Chlorine Binding Sites List in 2yhg
Chlorine binding site 2 out of 2 in the Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1940

b:9.7
occ:0.70
OG A:SER705 3.0 15.5 0.5
OG A:SER708 3.0 10.8 1.0
N A:TYR707 3.3 7.7 1.0
C A:SER705 3.3 6.9 1.0
CA A:SER705 3.5 6.5 0.5
CA A:SER705 3.5 7.1 0.5
N A:VAL706 3.6 6.8 1.0
N A:SER708 3.7 8.1 1.0
O A:SER705 3.7 7.7 1.0
CB A:TYR707 3.7 8.6 1.0
CA A:TYR707 3.8 7.8 1.0
CB A:SER705 3.8 8.6 0.5
CB A:SER705 3.9 6.9 0.5
O A:HOH2181 3.9 8.4 1.0
CB A:SER708 3.9 9.2 1.0
C A:TYR707 3.9 8.2 1.0
CG A:GLU798 4.1 11.1 1.0
C A:VAL706 4.3 7.0 1.0
CA A:SER708 4.4 8.7 1.0
OG A:SER705 4.5 7.0 0.5
CA A:VAL706 4.5 7.0 1.0
CD2 A:TYR707 4.6 9.5 1.0
CG A:TYR707 4.6 9.0 1.0
O A:ARG704 4.7 8.4 1.0
O A:TYR707 4.8 9.6 1.0
N A:SER705 4.8 6.7 1.0
CB A:GLU798 4.9 10.7 1.0

Reference:

J.H.Hehemann, C.Marsters, A.B.Boraston. Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism. Proteins V. 79 2992 2011.
ISSN: ESSN 1097-0134
PubMed: 21905122
DOI: 10.1002/PROT.23126
Page generated: Sat Dec 12 09:28:58 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy