Chlorine in PDB 2ykp: Structure of the Human Line-1 ORF1P Trimer

The structure of Structure of the Human Line-1 ORF1P Trimer, PDB code: 2ykp was solved by E.Khazina, O.Weichenrieder, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.520 / 3.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	73.730, 89.920, 111.620, 90.00, 90.00, 90.00
R / Rfree (%)	22.51 / 27.36

The binding sites of Chlorine atom in the Structure of the Human Line-1 ORF1P Trimer (pdb code 2ykp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of the Human Line-1 ORF1P Trimer, PDB code: 2ykp:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of the Human Line-1 ORF1P Trimer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Human Line-1 ORF1P Trimer within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1324 b:45.7 occ:1.00 ND2 C:ASN142 3.2 25.9 1.0 ND2 B:ASN142 3.3 35.2 1.0 ND2 A:ASN142 3.3 35.4 1.0 CB B:ASN142 3.9 37.2 1.0 CB A:ASN142 4.0 38.2 1.0 CG B:ASN142 4.0 39.7 1.0 CG A:ASN142 4.1 39.8 1.0 CB C:ASN142 4.1 32.2 1.0 CG C:ASN142 4.1 32.0 1.0 CA A:ILE139 4.2 42.6 1.0 CG1 A:ILE139 4.2 43.6 1.0 CG2 A:ILE139 4.3 42.7 1.0 CG1 C:ILE139 4.3 48.5 1.0 CG2 B:ILE139 4.3 33.2 1.0 CG1 B:ILE139 4.4 27.6 1.0 CA B:ILE139 4.4 32.3 1.0 CA C:ILE139 4.5 44.3 1.0 CB A:ILE139 4.5 42.4 1.0 CB B:ILE139 4.6 32.1 1.0 CG2 C:ILE139 4.7 48.4 1.0 CB C:ILE139 4.7 48.3 1.0 O A:ILE139 4.8 44.6 1.0 O B:ILE139 4.9 37.1 1.0

Chlorine binding site 2 out of 2 in the Structure of the Human Line-1 ORF1P Trimer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Human Line-1 ORF1P Trimer within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1325 b:58.9 occ:1.00 NE C:ARG135 3.1 57.2 1.0 NH2 C:ARG135 3.4 63.9 1.0 NE A:ARG135 3.5 53.8 1.0 NH2 A:ARG135 3.5 60.1 1.0 NH1 B:ARG135 3.6 59.6 1.0 CZ C:ARG135 3.7 62.2 1.0 CD B:ARG135 3.9 51.9 1.0 CZ A:ARG135 4.0 57.7 1.0 CD C:ARG135 4.2 49.8 1.0 CZ B:ARG135 4.4 59.2 1.0 NE B:ARG135 4.5 55.3 1.0 CG A:ARG135 4.6 46.7 1.0 CD A:ARG135 4.6 49.8 1.0 CA B:GLY132 4.6 37.8 1.0 CB A:ARG135 4.7 46.2 1.0 CA C:GLY132 4.7 38.4 1.0 CA A:GLY132 4.7 48.6 1.0 CB C:ARG135 4.8 38.0 1.0 CG B:ARG135 4.9 50.6 1.0 CB B:ARG135 4.9 48.5 1.0

E.Khazina, V.Truffault, R.Buettner, S.Schmidt, M.Coles, O.Weichenrieder. Trimeric Structure and Flexibility of the L1ORF1P Protein in Human L1 Retrotransposition Nat.Struct.Mol.Biol. V. 18 1006 2011.
ISSN: ISSN 1545-9993
PubMed: 21822284
DOI: 10.1038/NSMB.2097