Chlorine in PDB 2ykq: Structure of the Human Line-1 ORF1P Trimer

The structure of Structure of the Human Line-1 ORF1P Trimer, PDB code: 2ykq was solved by E.Khazina, O.Weichenrieder, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	69.81 / 3.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	71.440, 91.640, 107.740, 90.00, 90.00, 90.00
R / Rfree (%)	23.9 / 28.6

The binding sites of Chlorine atom in the Structure of the Human Line-1 ORF1P Trimer (pdb code 2ykq). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of the Human Line-1 ORF1P Trimer, PDB code: 2ykq:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of the Human Line-1 ORF1P Trimer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Human Line-1 ORF1P Trimer within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1324 b:69.0 occ:1.00 ND2 C:ASN142 3.1 43.4 1.0 ND2 B:ASN142 3.3 29.1 1.0 ND2 A:ASN142 3.3 56.9 1.0 CB C:ASN142 3.9 42.5 1.0 CG C:ASN142 3.9 44.9 1.0 CB A:ASN142 4.1 53.6 1.0 CB B:ASN142 4.1 35.2 1.0 CG B:ASN142 4.2 36.2 1.0 CG A:ASN142 4.2 57.8 1.0 CG1 B:ILE139 4.2 39.0 1.0 CA A:ILE139 4.3 44.1 1.0 CA B:ILE139 4.3 40.9 1.0 CA C:ILE139 4.3 40.4 1.0 CG2 B:ILE139 4.3 32.0 1.0 CG1 A:ILE139 4.4 43.9 1.0 CG2 A:ILE139 4.4 43.3 1.0 CG2 C:ILE139 4.5 39.2 1.0 CB B:ILE139 4.5 37.8 1.0 CG1 C:ILE139 4.6 43.9 1.0 CB A:ILE139 4.6 43.2 1.0 O C:ILE139 4.7 38.9 1.0 CB C:ILE139 4.7 41.3 1.0 O A:ILE139 4.7 46.5 1.0 O B:ILE139 4.7 49.8 1.0

Chlorine binding site 2 out of 2 in the Structure of the Human Line-1 ORF1P Trimer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Human Line-1 ORF1P Trimer within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1325 b:94.2 occ:1.00 NE A:ARG135 3.1 52.6 1.0 NH2 A:ARG135 3.2 48.2 1.0 NH2 C:ARG135 3.5 73.2 1.0 NE C:ARG135 3.5 62.0 1.0 CZ A:ARG135 3.6 51.3 1.0 NE B:ARG135 3.8 53.2 1.0 NH2 B:ARG135 3.8 54.3 1.0 CZ C:ARG135 3.8 70.0 1.0 CA A:GLY132 4.1 52.8 1.0 CD A:ARG135 4.2 51.1 1.0 CB A:ARG135 4.2 49.5 1.0 CG A:ARG135 4.2 48.8 1.0 CZ B:ARG135 4.2 52.3 1.0 CD C:ARG135 4.6 56.7 1.0 CA B:GLY132 4.7 55.0 1.0 NH1 A:ARG135 4.9 53.1 1.0 CD B:ARG135 4.9 52.9 1.0 O A:GLY132 4.9 56.2 1.0 N A:GLY132 4.9 51.9 1.0

E.Khazina, V.Truffault, R.Buettner, S.Schmidt, M.Coles, O.Weichenrieder. Trimeric Structure and Flexibility of the L1ORF1P Protein in Human L1 Retrotransposition Nat.Struct.Mol.Biol. V. 18 1006 2011.
ISSN: ISSN 1545-9993
PubMed: 21822284
DOI: 10.1038/NSMB.2097