Atomistry » Chlorine » PDB 2z0g-2zgd » 2z19
Atomistry »
  Chlorine »
    PDB 2z0g-2zgd »
      2z19 »

Chlorine in PDB 2z19: Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution

Enzymatic activity of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution

All present enzymatic activity of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution:
3.2.1.17;

Protein crystallography data

The structure of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution, PDB code: 2z19 was solved by K.Harata, T.Akiba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.15
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 26.085, 59.055, 30.703, 90.00, 110.63, 90.00
R / Rfree (%) 17.8 / 20.3

Other elements in 2z19:

The structure of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution (pdb code 2z19). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution, PDB code: 2z19:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 2z19

Go back to Chlorine Binding Sites List in 2z19
Chlorine binding site 1 out of 5 in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl131

b:11.1
occ:1.00
 NE A:ARG14 3.1 27.1 1.0
NH2 A:ARG14 3.1 20.3 1.0
NE2 A:HIS15 3.3 12.8 1.0
CZ A:ARG14 3.5 15.5 1.0
CD2 A:HIS15 3.8 11.4 1.0
O A:HOH223 4.0 19.4 1.0
CB A:ALA11 4.1 10.2 1.0
CD A:ARG14 4.1 15.4 1.0
CE1 A:HIS15 4.4 15.9 1.0
CA A:ALA11 4.7 7.5 1.0
OG1 A:THR89 4.7 11.7 1.0
CG A:ARG14 4.7 12.2 1.0
CG1 A:ILE88 4.8 9.3 1.0
NH1 A:ARG14 4.8 17.1 1.0
O A:ALA11 4.9 7.9 1.0

Chlorine binding site 2 out of 5 in 2z19

Go back to Chlorine Binding Sites List in 2z19
Chlorine binding site 2 out of 5 in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl132

b:6.2
occ:0.52
 O A:HOH138 1.1 6.0 0.5
NE1 A:TRP63 3.1 8.9 1.0
O A:HOH175 3.1 12.2 1.0
O A:HOH156 3.3 8.3 1.0
O A:HOH143 3.4 5.6 1.0
CD1 A:TRP63 3.7 7.0 1.0
CB A:ASN59 4.2 7.4 1.0
CE2 A:TRP63 4.3 7.8 1.0
O A:HOH140 4.5 9.1 1.0
CB A:ALA107 4.6 11.5 1.0
O A:ALA107 4.7 9.0 1.0
CZ2 A:TRP63 4.8 12.2 1.0
CG A:ASN59 5.0 4.3 1.0
O A:HOH141 5.0 10.5 1.0

Chlorine binding site 3 out of 5 in 2z19

Go back to Chlorine Binding Sites List in 2z19
Chlorine binding site 3 out of 5 in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl133

b:12.2
occ:0.50
 O A:HOH139 2.5 9.4 0.5
N A:CYS6 3.3 6.2 1.0
N A:GLU7 3.4 6.7 1.0
CA A:GLY4 3.7 8.1 1.0
C A:GLY4 3.7 5.7 1.0
N A:ARG5 3.7 6.3 1.0
CB A:CYS6 3.8 5.4 1.0
CA A:CYS6 3.9 5.7 1.0
CB A:GLU7 4.0 6.8 1.0
O A:HOH178 4.1 12.8 1.0
C A:CYS6 4.1 5.5 1.0
C A:ARG5 4.3 6.4 1.0
CA A:GLU7 4.3 6.6 1.0
O A:GLY4 4.3 6.6 1.0
CA A:ARG5 4.5 8.1 1.0
N A:GLY4 4.8 7.9 1.0
SG A:CYS6 4.9 8.6 1.0

Chlorine binding site 4 out of 5 in 2z19

Go back to Chlorine Binding Sites List in 2z19
Chlorine binding site 4 out of 5 in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl136

b:13.0
occ:1.00
 O A:HOH279 2.7 16.3 0.5
OG A:SER24 3.0 6.3 1.0
N A:GLY26 3.1 3.9 1.0
OE1 A:GLN121 3.2 20.7 0.6
CG A:GLN121 3.4 17.1 0.6
CD A:GLN121 3.4 20.6 0.6
CB A:SER24 3.5 5.0 1.0
CA A:GLY26 3.6 3.2 1.0
CG A:GLN121 3.7 16.3 0.4
CA A:GLN121 3.8 8.7 1.0
N A:LEU25 3.9 5.9 1.0
N A:GLN121 4.1 7.3 1.0
C A:SER24 4.1 4.0 1.0
CB A:GLN121 4.1 11.0 0.4
C A:LEU25 4.2 2.8 1.0
CB A:GLN121 4.2 11.8 0.6
CG2 A:VAL120 4.2 8.8 1.0
NE2 A:GLN121 4.3 25.1 0.6
O A:VAL120 4.3 8.4 1.0
C A:VAL120 4.3 7.1 1.0
CD1 A:ILE124 4.3 20.6 1.0
CG1 A:ILE124 4.5 12.7 1.0
CA A:SER24 4.5 5.0 1.0
O A:SER24 4.5 5.8 1.0
CA A:LEU25 4.5 5.4 1.0
O A:HOH250 4.6 44.8 0.8
C A:GLY26 4.7 3.5 1.0
CB A:LEU25 4.7 4.8 1.0
N A:ASN27 4.8 4.3 1.0
CD A:GLN121 4.9 11.7 0.4
CB A:VAL120 5.0 6.9 1.0

Chlorine binding site 5 out of 5 in 2z19

Go back to Chlorine Binding Sites List in 2z19
Chlorine binding site 5 out of 5 in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl137

b:14.5
occ:1.00
 O A:HOH242 3.1 20.6 0.9
N A:SER81 3.2 5.0 1.0
N A:CYS80 3.4 5.8 1.0
O A:ASN65 3.4 6.6 1.0
CB A:SER81 3.7 4.7 0.4
CB A:SER81 3.9 7.4 0.6
C A:CYS80 3.9 4.6 1.0
CA A:CYS80 3.9 4.6 1.0
CB A:PRO79 4.0 6.8 1.0
CA A:ASP66 4.0 6.6 1.0
C A:PRO79 4.0 4.8 1.0
CA A:SER81 4.0 8.1 1.0
CB A:CYS80 4.1 5.1 1.0
OG A:SER81 4.2 8.3 0.6
CA A:PRO79 4.2 5.0 1.0
C A:ASN65 4.4 4.5 1.0
CB A:ASP66 4.4 6.1 1.0
N A:ASP66 4.7 6.8 1.0
C A:ASP66 4.8 7.0 1.0
O A:PRO79 4.9 4.4 1.0
OG A:SER81 4.9 6.4 0.4
O A:ASP66 4.9 9.8 1.0

Reference:

K.Harata, T.Akiba. Effect of A Sodium Ion on the Dehydration-Induced Phase Transition of Monoclinic Lysozyme Crystals. Acta Crystallogr.,Sect.D V. 63 1016 2007.
ISSN: ISSN 0907-4449
PubMed: 17704571
DOI: 10.1107/S0907444907031319
Page generated: Sat Jul 20 15:23:16 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy