Atomistry » Chlorine » PDB 2yzr-2zgb » 2z19
Atomistry »
  Chlorine »
    PDB 2yzr-2zgb »
      2z19 »

Chlorine in PDB 2z19: Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution

Enzymatic activity of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution

All present enzymatic activity of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution:
3.2.1.17;

Protein crystallography data

The structure of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution, PDB code: 2z19 was solved by K.Harata, T.Akiba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.15
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 26.085, 59.055, 30.703, 90.00, 110.63, 90.00
R / Rfree (%) 17.8 / 20.3

Other elements in 2z19:

The structure of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution (pdb code 2z19). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution, PDB code: 2z19:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 2z19

Go back to Chlorine Binding Sites List in 2z19
Chlorine binding site 1 out of 5 in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl131

b:11.1
occ:1.00
 NE A:ARG14 3.1 27.1 1.0
NH2 A:ARG14 3.1 20.3 1.0
NE2 A:HIS15 3.3 12.8 1.0
CZ A:ARG14 3.5 15.5 1.0
CD2 A:HIS15 3.8 11.4 1.0
O A:HOH223 4.0 19.4 1.0
CB A:ALA11 4.1 10.2 1.0
CD A:ARG14 4.1 15.4 1.0
CE1 A:HIS15 4.4 15.9 1.0
CA A:ALA11 4.7 7.5 1.0
OG1 A:THR89 4.7 11.7 1.0
CG A:ARG14 4.7 12.2 1.0
CG1 A:ILE88 4.8 9.3 1.0
NH1 A:ARG14 4.8 17.1 1.0
O A:ALA11 4.9 7.9 1.0

Chlorine binding site 2 out of 5 in 2z19

Go back to Chlorine Binding Sites List in 2z19
Chlorine binding site 2 out of 5 in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl132

b:6.2
occ:0.52
 O A:HOH138 1.1 6.0 0.5
NE1 A:TRP63 3.1 8.9 1.0
O A:HOH175 3.1 12.2 1.0
O A:HOH156 3.3 8.3 1.0
O A:HOH143 3.4 5.6 1.0
CD1 A:TRP63 3.7 7.0 1.0
CB A:ASN59 4.2 7.4 1.0
CE2 A:TRP63 4.3 7.8 1.0
O A:HOH140 4.5 9.1 1.0
CB A:ALA107 4.6 11.5 1.0
O A:ALA107 4.7 9.0 1.0
CZ2 A:TRP63 4.8 12.2 1.0
CG A:ASN59 5.0 4.3 1.0
O A:HOH141 5.0 10.5 1.0

Chlorine binding site 3 out of 5 in 2z19

Go back to Chlorine Binding Sites List in 2z19
Chlorine binding site 3 out of 5 in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl133

b:12.2
occ:0.50
 O A:HOH139 2.5 9.4 0.5
N A:CYS6 3.3 6.2 1.0
N A:GLU7 3.4 6.7 1.0
CA A:GLY4 3.7 8.1 1.0
C A:GLY4 3.7 5.7 1.0
N A:ARG5 3.7 6.3 1.0
CB A:CYS6 3.8 5.4 1.0
CA A:CYS6 3.9 5.7 1.0
CB A:GLU7 4.0 6.8 1.0
O A:HOH178 4.1 12.8 1.0
C A:CYS6 4.1 5.5 1.0
C A:ARG5 4.3 6.4 1.0
CA A:GLU7 4.3 6.6 1.0
O A:GLY4 4.3 6.6 1.0
CA A:ARG5 4.5 8.1 1.0
N A:GLY4 4.8 7.9 1.0
SG A:CYS6 4.9 8.6 1.0

Chlorine binding site 4 out of 5 in 2z19

Go back to Chlorine Binding Sites List in 2z19
Chlorine binding site 4 out of 5 in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl136

b:13.0
occ:1.00
 O A:HOH279 2.7 16.3 0.5
OG A:SER24 3.0 6.3 1.0
N A:GLY26 3.1 3.9 1.0
OE1 A:GLN121 3.2 20.7 0.6
CG A:GLN121 3.4 17.1 0.6
CD A:GLN121 3.4 20.6 0.6
CB A:SER24 3.5 5.0 1.0
CA A:GLY26 3.6 3.2 1.0
CG A:GLN121 3.7 16.3 0.4
CA A:GLN121 3.8 8.7 1.0
N A:LEU25 3.9 5.9 1.0
N A:GLN121 4.1 7.3 1.0
C A:SER24 4.1 4.0 1.0
CB A:GLN121 4.1 11.0 0.4
C A:LEU25 4.2 2.8 1.0
CB A:GLN121 4.2 11.8 0.6
CG2 A:VAL120 4.2 8.8 1.0
NE2 A:GLN121 4.3 25.1 0.6
O A:VAL120 4.3 8.4 1.0
C A:VAL120 4.3 7.1 1.0
CD1 A:ILE124 4.3 20.6 1.0
CG1 A:ILE124 4.5 12.7 1.0
CA A:SER24 4.5 5.0 1.0
O A:SER24 4.5 5.8 1.0
CA A:LEU25 4.5 5.4 1.0
O A:HOH250 4.6 44.8 0.8
C A:GLY26 4.7 3.5 1.0
CB A:LEU25 4.7 4.8 1.0
N A:ASN27 4.8 4.3 1.0
CD A:GLN121 4.9 11.7 0.4
CB A:VAL120 5.0 6.9 1.0

Chlorine binding site 5 out of 5 in 2z19

Go back to Chlorine Binding Sites List in 2z19
Chlorine binding site 5 out of 5 in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl137

b:14.5
occ:1.00
 O A:HOH242 3.1 20.6 0.9
N A:SER81 3.2 5.0 1.0
N A:CYS80 3.4 5.8 1.0
O A:ASN65 3.4 6.6 1.0
CB A:SER81 3.7 4.7 0.4
CB A:SER81 3.9 7.4 0.6
C A:CYS80 3.9 4.6 1.0
CA A:CYS80 3.9 4.6 1.0
CB A:PRO79 4.0 6.8 1.0
CA A:ASP66 4.0 6.6 1.0
C A:PRO79 4.0 4.8 1.0
CA A:SER81 4.0 8.1 1.0
CB A:CYS80 4.1 5.1 1.0
OG A:SER81 4.2 8.3 0.6
CA A:PRO79 4.2 5.0 1.0
C A:ASN65 4.4 4.5 1.0
CB A:ASP66 4.4 6.1 1.0
N A:ASP66 4.7 6.8 1.0
C A:ASP66 4.8 7.0 1.0
O A:PRO79 4.9 4.4 1.0
OG A:SER81 4.9 6.4 0.4
O A:ASP66 4.9 9.8 1.0

Reference:

K.Harata, T.Akiba. Effect of A Sodium Ion on the Dehydration-Induced Phase Transition of Monoclinic Lysozyme Crystals. Acta Crystallogr.,Sect.D V. 63 1016 2007.
ISSN: ISSN 0907-4449
PubMed: 17704571
DOI: 10.1107/S0907444907031319
Page generated: Sat Dec 12 09:29:59 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy