Atomistry » Chlorine » PDB 2z0g-2zgd » 2z39
Atomistry »
  Chlorine »
    PDB 2z0g-2zgd »
      2z39 »

Chlorine in PDB 2z39: Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A)

Enzymatic activity of Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A)

All present enzymatic activity of Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A):
3.2.1.14;

Protein crystallography data

The structure of Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A), PDB code: 2z39 was solved by W.Ubhayasekera, T.Bergfors, S.L.Mowbray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.10 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 60.988, 47.254, 77.668, 90.00, 100.85, 90.00
R / Rfree (%) 17.8 / 22.2

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 19;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A) (pdb code 2z39). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 19 binding sites of Chlorine where determined in the Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A), PDB code: 2z39:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 19 in 2z39

Go back to Chlorine Binding Sites List in 2z39
Chlorine binding site 1 out of 19 in the Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1003

b:21.0
occ:1.00
 N A:PHE256 3.3 14.4 1.0
NH2 A:ARG260 3.4 12.0 1.0
CD A:LYS255 3.6 22.2 1.0
CA A:LYS255 3.9 16.0 1.0
O A:PHE256 4.0 12.7 1.0
CG A:PRO286 4.1 16.1 1.0
CB A:PHE256 4.1 15.9 1.0
C A:LYS255 4.1 14.8 1.0
OD2 A:ASP287 4.2 26.1 1.0
CA A:PHE256 4.2 14.1 1.0
CD2 A:PHE256 4.3 22.5 1.0
O A:HOH1070 4.4 30.4 1.0
CB A:LYS255 4.4 16.1 1.0
O A:GLY254 4.5 17.4 1.0
CE A:LYS255 4.5 26.1 1.0
CG A:ASP287 4.6 22.1 1.0
C A:PHE256 4.6 13.0 1.0
CG A:LYS255 4.6 17.7 1.0
CZ A:ARG260 4.7 11.8 1.0
CG A:PHE256 4.7 18.0 1.0
CD A:PRO286 4.7 16.6 1.0
OD1 A:ASP287 4.8 22.4 1.0
OH A:TYR258 4.9 15.6 1.0
CE2 A:TYR258 5.0 15.3 1.0

Chlorine binding site 2 out of 19 in 2z39

Go back to Chlorine Binding Sites List in 2z39
Chlorine binding site 2 out of 19 in the Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1006

b:21.2
occ:1.00
 N A:GLY377 3.2 14.8 1.0
CA A:GLY377 3.7 15.7 1.0
CB A:ASP375 3.8 15.2 1.0
CD A:PRO376 3.8 14.1 1.0
N A:PRO376 4.0 14.1 1.0
O A:GLY377 4.0 16.3 1.0
C A:GLY377 4.0 16.3 1.0
C A:ASP375 4.3 14.7 1.0
CA A:ASP375 4.3 15.3 1.0
C A:PRO376 4.3 13.5 1.0
CG A:ASP375 4.4 19.8 1.0
CA A:PRO376 4.6 13.6 1.0
CG A:PRO376 4.7 14.0 1.0
CB A:PRO376 4.7 13.3 1.0
OD1 A:ASP375 4.8 21.5 1.0
N A:SER378 4.9 16.9 1.0

Chlorine binding site 3 out of 19 in 2z39

Go back to Chlorine Binding Sites List in 2z39
Chlorine binding site 3 out of 19 in the Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1010

b:29.0
occ:1.00
 O A:HOH1088 2.8 22.3 1.0
O A:GLU349 2.9 10.7 1.0
N A:GLY352 2.9 12.7 1.0
CA A:GLY352 3.3 12.6 1.0
CA A:ASP383 3.4 15.8 1.0
CA A:CYS350 3.5 11.7 1.0
C A:CYS350 3.6 12.1 1.0
CB A:ASP383 3.7 16.3 1.0
N A:ALA351 3.7 12.0 1.0
N A:ASP383 3.7 13.8 1.0
CG2 A:VAL358 3.8 9.1 1.0
C A:GLU349 3.9 11.1 1.0
C A:CYS382 4.0 12.5 1.0
O A:CYS382 4.0 11.9 1.0
C A:GLY352 4.0 13.2 1.0
C A:ALA351 4.1 13.0 1.0
N A:ARG353 4.1 11.9 1.0
O A:CYS350 4.1 11.4 1.0
SG A:CYS382 4.2 12.9 1.0
N A:CYS350 4.2 10.9 1.0
OD2 A:ASP381 4.4 18.4 1.0
CB A:VAL358 4.4 7.2 1.0
CA A:ALA351 4.5 12.7 1.0
CB A:CYS350 4.6 12.4 1.0
CA A:VAL355 4.6 9.4 1.0
N A:VAL355 4.7 9.2 1.0
CG2 A:VAL355 4.7 11.2 1.0
C A:ASP383 4.7 15.8 1.0
N A:ASP354 4.7 11.1 1.0
CG1 A:VAL358 4.8 8.9 1.0
C A:ASP354 4.8 10.0 1.0
O A:ASP354 4.8 9.3 1.0
CA A:CYS382 4.9 12.7 1.0
O A:GLY352 4.9 12.8 1.0
O A:ASP383 5.0 16.9 1.0

Chlorine binding site 4 out of 19 in 2z39

Go back to Chlorine Binding Sites List in 2z39
Chlorine binding site 4 out of 19 in the Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1011

b:31.9
occ:1.00
 OH A:TYR157 3.0 13.3 1.0
N A:ASP177 3.4 9.4 1.0
N A:TYR176 3.5 9.2 1.0
NE A:ARG153 3.7 24.7 1.0
OD1 A:ASP177 3.8 23.1 1.0
CG A:ASP177 3.8 17.4 1.0
CB A:TYR176 3.8 9.2 1.0
CB A:THR175 3.9 9.9 1.0
CZ A:TYR157 4.0 13.5 1.0
CA A:TYR176 4.0 8.8 1.0
CB A:ASP177 4.1 11.6 1.0
CE2 A:TYR157 4.1 11.6 1.0
OD2 A:ASP177 4.2 23.6 1.0
O A:HOH1119 4.2 36.8 1.0
C A:TYR176 4.2 9.3 1.0
NH2 A:ARG153 4.3 29.9 1.0
CA A:ASP177 4.4 10.7 1.0
C A:THR175 4.4 9.3 1.0
CZ A:ARG153 4.5 27.8 1.0
CA A:THR175 4.5 9.3 1.0
CD A:ARG153 4.5 18.8 1.0
OG1 A:THR175 4.5 9.4 1.0
CG2 A:THR175 4.7 11.5 1.0
CD2 A:TYR176 4.7 11.0 1.0
CG A:ARG153 4.7 13.6 1.0
CG A:TYR176 4.8 10.4 1.0
O A:HOH1192 4.9 41.1 1.0

Chlorine binding site 5 out of 19 in 2z39

Go back to Chlorine Binding Sites List in 2z39
Chlorine binding site 5 out of 19 in the Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1012

b:31.6
occ:1.00
 OG A:SER363 3.0 4.5 0.5
O A:HOH1113 3.0 18.6 1.0
N A:ASN225 3.5 6.6 1.0
O A:HOH1174 3.6 31.9 1.0
CB A:ASN225 3.7 8.3 1.0
CB A:SER363 3.8 5.2 0.5
CB A:SER363 3.8 6.0 0.5
CG A:ASN225 3.8 9.2 1.0
O A:HOH1142 3.9 26.2 1.0
CB B:SER218 3.9 12.1 0.5
CB A:ALA224 4.0 8.1 1.0
OG A:SER363 4.0 9.1 0.5
CB B:SER218 4.0 12.2 0.5
OG B:SER218 4.1 13.0 0.5
N A:ALA224 4.2 7.8 1.0
ND2 A:ASN225 4.2 11.8 1.0
CA A:ASN225 4.2 7.5 1.0
OD1 A:ASN225 4.2 8.0 1.0
C A:ALA224 4.3 7.2 1.0
CA A:ALA224 4.3 7.5 1.0
OG B:SER218 4.6 12.4 0.5
O B:SER218 4.8 13.8 1.0
O B:HOH1021 4.8 4.0 1.0
C A:GLY223 5.0 8.0 1.0

Chlorine binding site 6 out of 19 in 2z39

Go back to Chlorine Binding Sites List in 2z39
Chlorine binding site 6 out of 19 in the Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1013

b:29.2
occ:1.00
 O A:ALA183 2.8 12.7 1.0
O A:PHE189 2.9 9.4 1.0
O A:GLY145 2.9 18.2 1.0
O A:PHE186 3.1 12.1 1.0
ND2 A:ASN191 3.2 12.9 1.0
O A:PRO187 3.4 15.0 1.0
C A:ALA183 3.6 12.5 1.0
C A:GLY145 3.6 19.7 1.0
CA A:GLY145 3.6 20.8 1.0
CA A:PRO187 3.7 14.8 1.0
C A:PRO187 3.8 14.0 1.0
C A:PHE186 3.9 13.8 1.0
C A:PHE189 4.0 10.2 1.0
CB A:ALA183 4.1 10.2 1.0
CD2 A:LEU147 4.1 17.3 1.0
CG A:LEU147 4.1 16.9 1.0
N A:PRO187 4.2 14.2 1.0
N A:LYS184 4.3 14.3 1.0
CA A:ALA183 4.3 10.8 1.0
CD1 A:LEU147 4.4 17.6 1.0
CB A:PHE189 4.4 8.7 1.0
CA A:LYS184 4.5 16.1 1.0
N A:PHE189 4.5 10.9 1.0
CG A:ASN191 4.5 13.8 1.0
CA A:PHE189 4.6 10.0 1.0
O A:HOH1039 4.6 14.3 1.0
CD2 A:PHE189 4.8 10.0 1.0
N A:SER188 4.8 13.6 1.0
N A:ASP146 4.9 19.2 1.0
N A:GLY145 5.0 21.9 1.0
C A:LYS184 5.0 16.4 1.0
N A:PHE186 5.0 14.2 1.0
CA A:PHE186 5.0 13.5 1.0

Chlorine binding site 7 out of 19 in 2z39

Go back to Chlorine Binding Sites List in 2z39
Chlorine binding site 7 out of 19 in the Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1014

b:35.1
occ:1.00
 O A:HOH1188 2.9 29.6 1.0
O A:HOH1118 2.9 29.9 1.0
N A:ASN384 3.0 16.3 1.0
O A:HOH1226 3.1 33.5 1.0
CG A:GLN385 3.3 13.9 1.0
C A:ASN384 3.4 16.3 1.0
CA A:ASN384 3.4 17.4 1.0
O A:ASP381 3.4 12.6 1.0
CB A:ASN384 3.4 18.5 1.0
N A:GLN385 3.5 14.2 1.0
CA A:CYS382 3.7 12.7 1.0
C A:CYS382 3.7 12.5 1.0
N A:ASP383 3.8 13.8 1.0
O A:ASN384 3.9 16.4 1.0
C A:ASP381 4.0 12.6 1.0
O A:CYS382 4.2 11.9 1.0
N A:CYS382 4.2 12.2 1.0
C A:ASP383 4.2 15.8 1.0
NE2 A:GLN385 4.2 13.1 1.0
CB A:GLN385 4.3 12.9 1.0
CD A:GLN385 4.3 12.1 1.0
CA A:GLN385 4.4 13.4 1.0
OD1 A:ASP383 4.4 23.2 1.0
O A:GLY332 4.5 11.9 1.0
CG A:ASN384 4.6 23.0 1.0
CA A:ASP383 4.6 15.8 1.0
O A:HOH1043 4.8 22.0 1.0
CB A:CYS382 4.9 12.1 1.0

Chlorine binding site 8 out of 19 in 2z39

Go back to Chlorine Binding Sites List in 2z39
Chlorine binding site 8 out of 19 in the Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1016

b:35.9
occ:1.00
 O A:HOH1222 2.9 41.6 1.0
N A:ASP375 3.3 14.6 1.0
OD2 A:ASP375 3.6 23.2 1.0
CA A:VAL374 3.7 14.4 1.0
O A:HOH1116 3.8 25.8 1.0
CG A:ASP375 3.8 19.8 1.0
CB A:VAL374 3.9 14.9 1.0
CB A:ALA196 3.9 15.8 1.0
CB A:ASP375 4.0 15.2 1.0
C A:VAL374 4.1 14.2 1.0
CG1 A:VAL374 4.1 16.0 1.0
CA A:ASP375 4.3 15.3 1.0
OD1 A:ASP375 4.4 21.5 1.0
O A:GLY373 4.6 15.9 1.0
O A:HOH1144 4.7 21.2 1.0
O A:HOH1092 4.8 24.5 1.0
O A:ASP375 4.9 14.5 1.0
N A:VAL374 5.0 14.2 1.0

Chlorine binding site 9 out of 19 in 2z39

Go back to Chlorine Binding Sites List in 2z39
Chlorine binding site 9 out of 19 in the Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1001

b:12.8
occ:1.00
 O B:HOH1038 3.1 15.3 1.0
O B:HOH1172 3.2 23.0 1.0
N B:PHE256 3.3 10.6 1.0
O B:HOH1163 3.3 28.0 1.0
NH2 B:ARG260 3.4 10.4 1.0
O B:PHE256 3.9 10.0 1.0
CB B:PHE256 3.9 10.8 1.0
CD2 B:PHE256 3.9 15.5 1.0
CA B:LYS255 3.9 12.3 1.0
CD B:LYS255 4.0 13.1 1.0
CG B:PRO286 4.0 13.4 1.0
CA B:PHE256 4.1 10.4 1.0
C B:LYS255 4.1 11.6 1.0
CB B:ASP287 4.4 16.5 1.0
CB B:LYS255 4.4 12.2 1.0
CG B:PHE256 4.4 12.6 1.0
C B:PHE256 4.5 10.2 1.0
CG B:ASP287 4.6 18.2 1.0
CZ B:ARG260 4.6 9.5 1.0
CL B:CL1005 4.6 25.6 1.0
O B:GLY254 4.6 14.8 1.0
N B:ASP287 4.7 14.7 1.0
OD1 B:ASP287 4.7 15.5 1.0
CD B:PRO286 4.8 13.0 1.0
CG B:LYS255 4.8 13.0 1.0
O B:HOH1148 4.8 24.2 1.0
CA B:ASP287 5.0 15.7 1.0
CB B:PRO286 5.0 13.5 1.0

Chlorine binding site 10 out of 19 in 2z39

Go back to Chlorine Binding Sites List in 2z39
Chlorine binding site 10 out of 19 in the Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Brassica Juncea Chitinase Catalytic Module GLU234ALA Mutant (BJCHI3-E234A) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1002

b:15.4
occ:1.00
 O B:HOH1104 2.9 23.2 1.0
N B:LYS232 3.2 7.8 1.0
N B:GLU233 3.6 9.2 1.0
CA B:TYR231 3.8 7.8 1.0
CB B:HIS169 3.8 12.1 1.0
CG B:LYS232 3.8 9.2 1.0
O B:GLU233 3.8 9.5 1.0
O B:HIS169 3.9 13.9 1.0
C B:TYR231 4.0 7.6 1.0
CD1 B:TYR231 4.0 11.0 1.0
CB B:TYR231 4.0 7.8 1.0
CG B:GLU233 4.1 12.3 1.0
CA B:LYS232 4.1 8.8 1.0
C B:HIS169 4.3 11.9 1.0
C B:LYS232 4.3 9.3 1.0
CB B:LYS232 4.4 8.9 1.0
CG B:TYR231 4.5 8.1 1.0
O B:HOH1195 4.5 32.1 1.0
CA B:GLU233 4.6 9.7 1.0
C B:GLU233 4.6 10.2 1.0
CA B:HIS169 4.7 11.9 1.0
CG B:HIS169 4.8 14.1 1.0
N B:ALA170 4.9 11.3 1.0
CD B:LYS232 4.9 10.2 1.0
CB B:GLU233 4.9 9.4 1.0
CB B:ALA170 4.9 10.9 1.0
O B:CYS230 4.9 7.9 1.0
OE2 B:GLU233 5.0 19.2 1.0

Reference:

W.Ubhayasekera, C.M.Tang, S.W.T.Ho, G.Berglund, T.Bergfors, M.-L.Chye, S.L.Mowbray. Crystal Structures of A Family 19 Chitinase From Brassica Juncea Show Flexibility of Binding Cleft Loops Febs J. V. 274 3695 2007.
ISSN: ISSN 1742-464X
PubMed: 17608716
DOI: 10.1111/J.1742-4658.2007.05906.X
Page generated: Sat Jul 20 15:24:51 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy