Atomistry » Chlorine » PDB 2zgd-3a2n » 2zsg
Atomistry »
  Chlorine »
    PDB 2zgd-3a2n »
      2zsg »

Chlorine in PDB 2zsg: Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8

Enzymatic activity of Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8

All present enzymatic activity of Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8:
3.4.11.9;

Protein crystallography data

The structure of Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8, PDB code: 2zsg was solved by H.Mizutani, N.Kunishima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.65
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 116.972, 77.923, 77.553, 90.00, 92.44, 90.00
R / Rfree (%) 19.1 / 21.5

Other elements in 2zsg:

The structure of Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8 also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Sodium (Na) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8 (pdb code 2zsg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8, PDB code: 2zsg:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 2zsg

Go back to Chlorine Binding Sites List in 2zsg
Chlorine binding site 1 out of 4 in the Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1005

b:20.8
occ:1.00
 NH1 A:ARG279 3.1 16.8 1.0
O A:HOH1173 3.1 29.1 1.0
NH1 A:ARG275 3.3 26.7 1.0
CG A:ARG275 3.4 22.5 1.0
CD A:ARG275 3.4 25.0 1.0
CD A:ARG279 3.6 14.1 1.0
CZ A:ARG279 4.2 13.8 1.0
CZ A:ARG275 4.3 25.9 1.0
NE A:ARG275 4.3 25.4 1.0
NE A:ARG279 4.4 13.6 1.0
O A:HOH1160 4.6 27.7 1.0
CB A:ARG279 4.8 15.2 1.0
CG A:ARG279 4.8 15.2 1.0
CB A:ARG275 4.9 19.1 1.0

Chlorine binding site 2 out of 4 in 2zsg

Go back to Chlorine Binding Sites List in 2zsg
Chlorine binding site 2 out of 4 in the Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1006

b:31.2
occ:1.00
 NA A:NA1002 2.8 20.7 1.0
O A:LYS259 3.3 17.5 1.0
NZ A:LYS262 3.3 27.4 1.0
O A:HOH1020 3.7 14.7 1.0
CD A:LYS262 4.2 23.0 1.0
CE A:LYS262 4.3 26.3 1.0
CA A:ILE260 4.3 17.3 1.0
C A:LYS259 4.4 17.6 1.0
O A:HOH1022 4.6 14.8 1.0
C A:ILE260 4.6 16.4 1.0
O A:ILE260 4.7 17.3 1.0
O A:GLN344 4.8 14.7 1.0
CG A:LYS262 4.8 20.2 1.0
N A:ILE260 4.9 17.4 1.0

Chlorine binding site 3 out of 4 in 2zsg

Go back to Chlorine Binding Sites List in 2zsg
Chlorine binding site 3 out of 4 in the Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1007

b:18.5
occ:0.50
 NZ A:LYS342 3.0 15.1 1.0
CD A:LYS342 3.7 13.9 1.0
O A:HOH1177 3.7 32.0 1.0
CE A:LYS342 3.7 15.3 1.0
O A:HOH1388 3.8 44.5 1.0
OE1 A:GLU315 4.1 33.8 1.0
OE2 A:GLU136 4.5 30.7 1.0
OD1 A:ASN316 4.7 18.8 1.0
CG A:LYS342 4.9 16.1 1.0

Chlorine binding site 4 out of 4 in 2zsg

Go back to Chlorine Binding Sites List in 2zsg
Chlorine binding site 4 out of 4 in the Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1008

b:27.8
occ:1.00
 O B:HOH1041 3.0 24.1 1.0
O B:HOH1054 3.0 23.3 1.0
NH2 A:ARG109 3.3 19.5 1.0
CZ B:PHE108 3.8 16.4 1.0
CB B:PHE120 4.1 18.5 1.0
O B:PHE120 4.2 20.8 1.0
CZ A:ARG109 4.3 16.8 1.0
NH1 A:ARG109 4.3 17.7 1.0
CD2 B:PHE120 4.4 19.8 1.0
CE2 B:PHE108 4.4 17.4 1.0
N B:PHE120 4.7 21.9 1.0
CE1 B:PHE108 4.7 16.8 1.0
O B:HOH1293 4.7 48.5 1.0
CG B:PHE120 4.7 20.3 1.0
CA B:PHE120 4.8 20.7 1.0
C B:PHE120 4.8 20.8 1.0
OE2 B:GLU100 5.0 20.7 1.0

Reference:

H.Mizutani, N.Kunishima. Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8 To Be Published.
Page generated: Sat Jul 20 15:37:17 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy