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Chlorine in PDB 2zwi: Crystal Structure of Alpha/Beta-Galactoside Alpha-2,3- Sialyltransferase From A Luminous Marine Bacterium, Photobacterium Phosphoreum

Enzymatic activity of Crystal Structure of Alpha/Beta-Galactoside Alpha-2,3- Sialyltransferase From A Luminous Marine Bacterium, Photobacterium Phosphoreum

All present enzymatic activity of Crystal Structure of Alpha/Beta-Galactoside Alpha-2,3- Sialyltransferase From A Luminous Marine Bacterium, Photobacterium Phosphoreum:
2.4.99.4;

Protein crystallography data

The structure of Crystal Structure of Alpha/Beta-Galactoside Alpha-2,3- Sialyltransferase From A Luminous Marine Bacterium, Photobacterium Phosphoreum, PDB code: 2zwi was solved by T.Iwatani, N.Okino, M.Sakakura, H.Kajiwara, M.Ichikawa, Y.Takakura, M.Kimura, M.Ito, T.Yamamoto, Y.Kakuta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.69 / 2.01
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 54.429, 57.827, 59.246, 90.06, 106.76, 103.20
R / Rfree (%) 17.3 / 22.8

Other elements in 2zwi:

The structure of Crystal Structure of Alpha/Beta-Galactoside Alpha-2,3- Sialyltransferase From A Luminous Marine Bacterium, Photobacterium Phosphoreum also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Alpha/Beta-Galactoside Alpha-2,3- Sialyltransferase From A Luminous Marine Bacterium, Photobacterium Phosphoreum (pdb code 2zwi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Alpha/Beta-Galactoside Alpha-2,3- Sialyltransferase From A Luminous Marine Bacterium, Photobacterium Phosphoreum, PDB code: 2zwi:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 2zwi

Go back to Chlorine Binding Sites List in 2zwi
Chlorine binding site 1 out of 4 in the Crystal Structure of Alpha/Beta-Galactoside Alpha-2,3- Sialyltransferase From A Luminous Marine Bacterium, Photobacterium Phosphoreum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Alpha/Beta-Galactoside Alpha-2,3- Sialyltransferase From A Luminous Marine Bacterium, Photobacterium Phosphoreum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl411

b:16.2
occ:1.00
 O A:HOH518 2.9 19.9 1.0
N A:THR321 3.3 13.5 1.0
N A:SER280 3.3 15.2 1.0
CA A:ALA320 3.5 13.2 1.0
OG A:SER280 3.6 15.9 1.0
OG1 A:THR321 3.8 12.1 0.5
CE2 A:TYR322 3.8 11.5 1.0
CB A:SER280 3.8 16.1 1.0
CB A:ALA320 3.8 12.5 1.0
CG2 A:THR321 3.9 14.4 0.5
CD2 A:TYR322 3.9 12.5 1.0
CB A:ASN279 3.9 14.0 1.0
CZ A:TYR322 3.9 11.1 1.0
C A:ALA320 3.9 13.3 1.0
CA A:ASN279 4.0 13.9 1.0
CG A:TYR322 4.1 12.9 1.0
CE1 A:TYR322 4.1 11.0 1.0
C A:ASN279 4.1 14.8 1.0
CA A:SER280 4.2 16.4 1.0
CD1 A:TYR322 4.2 12.7 1.0
N A:TYR322 4.3 14.0 1.0
CA A:THR321 4.4 13.4 0.5
CA A:THR321 4.4 14.1 0.5
O A:HOH419 4.5 26.2 1.0
O A:SER319 4.5 15.0 1.0
OH A:TYR322 4.5 12.0 1.0
N A:ALA320 4.6 13.5 1.0
CB A:THR321 4.7 13.4 0.5
C A:THR321 4.8 14.2 1.0
CB A:THR321 4.8 14.2 0.5
CB A:TYR322 4.9 13.7 1.0
C A:SER319 5.0 14.4 1.0

Chlorine binding site 2 out of 4 in 2zwi

Go back to Chlorine Binding Sites List in 2zwi
Chlorine binding site 2 out of 4 in the Crystal Structure of Alpha/Beta-Galactoside Alpha-2,3- Sialyltransferase From A Luminous Marine Bacterium, Photobacterium Phosphoreum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Alpha/Beta-Galactoside Alpha-2,3- Sialyltransferase From A Luminous Marine Bacterium, Photobacterium Phosphoreum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl412

b:17.8
occ:1.00
 O A:TYR265 2.4 18.3 1.0
O A:HIS270 2.5 16.6 1.0
O A:SER268 2.5 19.8 1.0
OD1 A:ASN272 2.6 12.3 1.0
OD2 A:ASP311 2.6 17.2 1.0
O A:HOH579 2.7 33.0 1.0
O A:HOH536 2.7 20.0 1.0
CG A:ASN272 3.5 13.5 1.0
C A:SER268 3.5 20.0 1.0
C A:TYR265 3.6 18.0 1.0
ND2 A:ASN272 3.7 13.1 1.0
C A:HIS270 3.7 17.6 1.0
CG A:ASP311 3.7 14.3 1.0
N A:HIS270 3.9 19.5 1.0
N A:SER268 4.1 19.5 1.0
CB A:ASP311 4.2 13.5 1.0
CA A:SER268 4.2 19.7 1.0
OG A:SER268 4.2 19.4 1.0
CA A:HIS270 4.4 18.7 1.0
C A:PRO269 4.4 20.1 1.0
CB A:SER268 4.4 20.0 1.0
CA A:TYR265 4.4 17.1 1.0
N A:PRO269 4.5 20.3 1.0
N A:LYS266 4.5 18.5 1.0
O A:GLN264 4.6 17.0 1.0
CA A:LYS266 4.6 19.0 1.0
CA A:PRO269 4.7 20.3 1.0
C A:GLU271 4.7 15.1 1.0
OD1 A:ASP311 4.7 14.8 1.0
N A:GLU271 4.7 16.5 1.0
C A:LYS266 4.8 19.0 1.0
CB A:ASN272 4.8 13.0 1.0
N A:ASN272 4.9 14.1 1.0
O A:GLU271 4.9 14.8 1.0
N A:ALA267 4.9 19.1 1.0
CB A:HIS270 4.9 19.1 1.0
CA A:GLU271 5.0 16.2 1.0
O A:PRO269 5.0 20.2 1.0

Chlorine binding site 3 out of 4 in 2zwi

Go back to Chlorine Binding Sites List in 2zwi
Chlorine binding site 3 out of 4 in the Crystal Structure of Alpha/Beta-Galactoside Alpha-2,3- Sialyltransferase From A Luminous Marine Bacterium, Photobacterium Phosphoreum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Alpha/Beta-Galactoside Alpha-2,3- Sialyltransferase From A Luminous Marine Bacterium, Photobacterium Phosphoreum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl412

b:16.1
occ:1.00
 O B:HOH485 2.9 23.5 1.0
NZ A:LYS232 3.0 19.5 1.0
N B:SER280 3.3 14.3 1.0
N B:THR321 3.4 12.4 1.0
CE A:LYS232 3.5 16.8 1.0
CA B:ALA320 3.5 12.6 1.0
OG B:SER280 3.7 15.1 1.0
CB B:SER280 3.7 15.4 1.0
CE2 B:TYR322 3.8 13.8 1.0
OG1 B:THR321 3.8 12.9 1.0
CB B:ALA320 3.8 12.0 1.0
CD2 B:TYR322 3.8 12.5 1.0
CB B:ASN279 3.9 13.1 1.0
CZ B:TYR322 3.9 13.5 1.0
C B:ALA320 4.0 12.7 1.0
CA B:ASN279 4.0 13.0 1.0
CG B:TYR322 4.0 13.8 1.0
CA B:SER280 4.1 15.5 1.0
C B:ASN279 4.1 14.1 1.0
CE1 B:TYR322 4.2 13.2 1.0
CD1 B:TYR322 4.2 14.1 1.0
N B:TYR322 4.3 14.2 1.0
O A:HOH571 4.4 22.3 1.0
CA B:THR321 4.5 13.5 1.0
OH B:TYR322 4.6 13.5 1.0
N B:ALA320 4.6 12.7 1.0
O B:SER319 4.7 14.7 1.0
CB B:THR321 4.7 13.2 1.0
C B:THR321 4.8 14.2 1.0
CB B:TYR322 4.8 14.1 1.0
CD A:LYS232 5.0 15.3 1.0

Chlorine binding site 4 out of 4 in 2zwi

Go back to Chlorine Binding Sites List in 2zwi
Chlorine binding site 4 out of 4 in the Crystal Structure of Alpha/Beta-Galactoside Alpha-2,3- Sialyltransferase From A Luminous Marine Bacterium, Photobacterium Phosphoreum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Alpha/Beta-Galactoside Alpha-2,3- Sialyltransferase From A Luminous Marine Bacterium, Photobacterium Phosphoreum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl413

b:15.6
occ:1.00
 OD2 B:ASP311 2.5 16.4 1.0
O B:HIS270 2.5 17.7 1.0
ND2 B:ASN272 2.6 13.0 1.0
O B:HOH518 2.7 20.6 1.0
O B:SER268 2.7 21.0 1.0
O B:TYR265 2.7 16.9 1.0
CG B:ASN272 3.4 14.1 1.0
OD1 B:ASN272 3.5 16.2 1.0
CG B:ASP311 3.6 14.8 1.0
C B:SER268 3.6 20.9 1.0
C B:HIS270 3.7 18.4 1.0
C B:TYR265 3.8 17.1 1.0
OG B:SER268 3.9 22.9 1.0
N B:HIS270 3.9 20.0 1.0
CB B:ASP311 4.0 14.4 1.0
N B:SER268 4.2 19.8 1.0
CB B:SER268 4.2 20.7 1.0
CA B:SER268 4.3 20.5 1.0
CA B:HIS270 4.3 19.4 1.0
C B:PRO269 4.4 20.9 1.0
CA B:TYR265 4.6 16.6 1.0
N B:PRO269 4.6 21.1 1.0
O B:GLN264 4.6 16.3 1.0
OD1 B:ASP311 4.7 15.7 1.0
N B:LYS266 4.7 17.3 1.0
C B:GLU271 4.7 16.0 1.0
N B:GLU271 4.7 17.4 1.0
CA B:PRO269 4.8 21.1 1.0
CB B:ASN272 4.8 13.7 1.0
CA B:LYS266 4.8 18.1 1.0
CB B:HIS270 4.9 19.5 1.0
O B:GLU271 4.9 15.6 1.0
N B:ASN272 4.9 14.7 1.0
CA B:GLU271 5.0 17.2 1.0
C B:LYS266 5.0 17.7 1.0

Reference:

T.Iwatani, N.Okino, M.Sakakura, H.Kajiwara, Y.Takakura, M.Kimura, M.Ito, T.Yamamoto, Y.Kakuta. Crystal Structure of Alpha/Beta-Galactoside ALPHA2,3-Sialyltransferase From A Luminous Marine Bacterium, Photobacterium Phosphoreum Febs Lett. V. 583 2083 2009.
ISSN: ISSN 0014-5793
PubMed: 19467231
DOI: 10.1016/J.FEBSLET.2009.05.032
Page generated: Sat Jul 20 15:38:20 2024

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