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Chlorine in PDB 3a8z: Crystal Structure of Hen Egg White Lysozyme

Enzymatic activity of Crystal Structure of Hen Egg White Lysozyme

All present enzymatic activity of Crystal Structure of Hen Egg White Lysozyme:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hen Egg White Lysozyme, PDB code: 3a8z was solved by S.Abe, T.Koshiyama, T.Ohki, T.Hikage, Y.Watanabe, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 16.73 / 1.40
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.785, 78.785, 36.961, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 21.2

Other elements in 3a8z:

The structure of Crystal Structure of Hen Egg White Lysozyme also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Hen Egg White Lysozyme (pdb code 3a8z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Crystal Structure of Hen Egg White Lysozyme, PDB code: 3a8z:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 3a8z

Go back to Chlorine Binding Sites List in 3a8z
Chlorine binding site 1 out of 7 in the Crystal Structure of Hen Egg White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Hen Egg White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl131

b:13.4
occ:1.00
 OH A:TYR23 3.0 10.8 1.0
O A:HOH152 3.2 12.6 1.0
CZ A:TYR23 3.7 9.1 1.0
CE2 A:TYR23 3.7 9.0 1.0
CA A:GLY104 4.1 9.8 1.0
O A:ARG21 4.6 11.4 1.0
N A:GLY104 4.7 10.6 1.0
CE1 A:TYR23 4.9 8.1 1.0
CD2 A:TYR23 4.9 8.9 1.0
O A:HOH262 4.9 34.5 1.0

Chlorine binding site 2 out of 7 in 3a8z

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Chlorine binding site 2 out of 7 in the Crystal Structure of Hen Egg White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Hen Egg White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl132

b:14.1
occ:1.00
 O A:HOH273 3.1 21.2 1.0
N A:THR69 3.2 12.1 1.0
O A:HOH147 3.2 12.1 1.0
O A:HOH219 3.2 25.0 1.0
O A:THR69 3.4 13.1 1.0
O A:HOH198 3.4 27.4 1.0
N A:ARG68 3.5 12.2 1.0
C A:GLY67 3.5 12.6 1.0
CA A:GLY67 3.6 11.8 1.0
OG A:SER72 3.7 14.1 1.0
C A:THR69 3.7 12.7 1.0
N A:GLY67 3.7 11.1 1.0
ND2 A:ASN65 3.8 10.1 1.0
CA A:THR69 3.8 12.1 1.0
O A:HOH154 4.0 14.7 1.0
O A:GLY67 4.2 13.2 1.0
C A:ARG68 4.2 12.7 1.0
CB A:THR69 4.2 12.1 1.0
OD1 A:ASP66 4.3 9.8 1.0
CA A:ARG68 4.3 12.3 0.5
CA A:ARG68 4.3 12.3 0.5
N A:PRO70 4.5 13.9 1.0
NA A:NA130 4.7 12.6 1.0
O A:HOH192 4.8 17.1 0.5
C A:ASP66 4.8 10.8 1.0
OG1 A:THR69 4.9 11.9 1.0
CB A:SER72 4.9 15.4 1.0
N A:ASP66 4.9 9.7 1.0

Chlorine binding site 3 out of 7 in 3a8z

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Chlorine binding site 3 out of 7 in the Crystal Structure of Hen Egg White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Hen Egg White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl133

b:17.3
occ:1.00
 O A:HOH235 2.7 33.0 1.0
OG A:SER24 3.0 13.9 1.0
N A:GLY26 3.1 10.6 1.0
CB A:SER24 3.4 12.0 1.0
CA A:GLY26 3.5 10.1 1.0
CA A:GLN121 3.6 14.6 1.0
CD1 A:ILE124 3.7 20.2 1.0
CB A:GLN121 4.0 15.8 1.0
N A:GLN121 4.0 13.9 1.0
CG1 A:ILE124 4.1 17.0 1.0
CG A:GLN121 4.2 19.8 1.0
N A:LEU25 4.2 11.8 1.0
O A:VAL120 4.3 12.9 1.0
C A:VAL120 4.3 13.2 1.0
C A:LEU25 4.3 11.5 1.0
CG2 A:VAL120 4.3 13.8 1.0
C A:SER24 4.3 11.9 1.0
C A:GLY26 4.5 10.0 1.0
CA A:SER24 4.5 11.5 1.0
N A:ASN27 4.6 9.6 1.0
CA A:LEU25 4.7 11.7 1.0
C A:GLN121 4.8 13.8 1.0
O A:SER24 4.8 12.3 1.0
O A:HOH252 4.9 23.9 1.0
CB A:LEU25 5.0 12.7 1.0

Chlorine binding site 4 out of 7 in 3a8z

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Chlorine binding site 4 out of 7 in the Crystal Structure of Hen Egg White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Hen Egg White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl134

b:22.5
occ:1.00
 O A:HOH266 3.2 35.6 1.0
NZ A:LYS33 3.6 18.8 1.0
O A:HOH264 3.6 32.2 1.0
CE2 A:PHE38 3.6 11.6 1.0
CZ3 A:TRP123 4.0 14.1 1.0
CE A:LYS33 4.0 16.0 1.0
CD A:LYS33 4.2 13.2 1.0
CD A:ARG5 4.3 15.9 1.0
CB A:ARG5 4.3 14.0 1.0
CZ A:PHE38 4.3 10.3 1.0
O1 A:GOL138 4.4 36.4 1.0
O A:HOH243 4.4 29.8 1.0
CD2 A:PHE38 4.6 10.3 1.0
CG A:ARG5 4.7 14.9 1.0
CE3 A:TRP123 4.8 13.8 1.0
CH2 A:TRP123 4.9 14.2 1.0
NE A:ARG5 4.9 17.1 1.0

Chlorine binding site 5 out of 7 in 3a8z

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Chlorine binding site 5 out of 7 in the Crystal Structure of Hen Egg White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Hen Egg White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl135

b:21.1
occ:1.00
 O A:HOH163 2.9 19.3 1.0
OD1 A:ASN65 3.3 15.2 1.0
O A:HOH141 3.3 34.4 1.0
CB A:PRO79 3.7 11.4 1.0
CA A:PRO79 3.7 11.4 1.0
CB A:ASN65 3.8 10.4 1.0
N A:PRO79 3.9 11.5 1.0
CG A:ASN65 3.9 12.0 1.0
CD A:PRO79 4.2 12.2 1.0
O A:ASN65 4.3 9.6 1.0
CG A:PRO79 4.4 12.6 1.0
C A:ILE78 4.5 11.9 1.0
O A:ILE78 4.6 11.7 1.0
ND2 A:ASN74 4.8 13.3 1.0
CA A:ASN65 4.9 10.0 1.0
C A:ASN65 4.9 9.8 1.0

Chlorine binding site 6 out of 7 in 3a8z

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Chlorine binding site 6 out of 7 in the Crystal Structure of Hen Egg White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Hen Egg White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl136

b:23.2
occ:1.00
 N A:ILE88 3.3 12.3 1.0
O A:HOH207 3.4 26.4 1.0
O A:HOH208 3.4 23.4 1.0
CG1 A:ILE88 3.6 12.4 1.0
CA A:ASP87 3.8 13.8 1.0
NE2 A:HIS15 3.9 19.1 1.0
O A:SER86 4.0 14.4 1.0
C A:ASP87 4.0 13.1 1.0
OD1 A:ASP87 4.1 15.2 1.0
CB A:ILE88 4.2 12.3 1.0
CG2 A:ILE88 4.2 12.2 1.0
CZ A:PHE3 4.2 12.9 1.0
CA A:ILE88 4.2 12.1 1.0
CB A:ALA11 4.3 13.3 1.0
CD2 A:HIS15 4.6 16.6 1.0
CD1 A:ILE88 4.6 13.4 1.0
O A:HOH248 4.6 32.5 1.0
CG A:ASP87 4.6 16.7 1.0
NH1 A:ARG14 4.6 21.0 0.5
CB A:ASP87 4.7 14.4 1.0
N A:ASP87 4.8 13.4 1.0
C A:SER86 4.8 13.8 1.0
CE1 A:HIS15 4.8 19.0 1.0
CE2 A:PHE3 4.8 11.1 1.0

Chlorine binding site 7 out of 7 in 3a8z

Go back to Chlorine Binding Sites List in 3a8z
Chlorine binding site 7 out of 7 in the Crystal Structure of Hen Egg White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Hen Egg White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl137

b:29.8
occ:1.00
 N A:ASN74 3.1 13.2 1.0
NE A:ARG73 3.3 20.4 1.0
C A:ASN74 3.7 13.2 1.0
O A:ASN74 3.8 13.3 1.0
CB A:ARG73 3.8 13.8 1.0
CA A:ASN74 3.8 12.8 1.0
CD A:ARG73 4.0 19.2 1.0
CA A:ARG73 4.0 13.7 1.0
C A:ARG73 4.0 13.4 1.0
N A:LEU75 4.2 12.8 1.0
CB A:ASN74 4.2 13.0 1.0
CD2 A:LEU75 4.2 16.6 1.0
CZ A:ARG73 4.2 20.2 1.0
NH2 A:ARG73 4.2 21.9 1.0
CG A:ARG73 4.5 16.1 1.0
CA A:LEU75 4.6 13.9 1.0
CG A:LEU75 4.8 14.8 1.0
O A:HOH227 4.8 35.8 1.0

Reference:

T.Ueno, S.Abe, T.Koshiyama, T.Ohki, T.Hikage, Y.Watanabe. Elucidation of Metal-Ion Accumulation Induced By Hydrogen Bonds on Protein Surfaces By Using Porous Lysozyme Crystals Containing Rh(III) Ions As the Model Surfaces Chemistry V. 16 2730 2010.
ISSN: ISSN 0947-6539
PubMed: 20146274
DOI: 10.1002/CHEM.200903269
Page generated: Sat Jul 20 15:45:59 2024

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