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Chlorine in PDB 3aei: Crystal Structure of the Prefoldin BETA2 Subunit From Thermococcus Strain Ks-1

Protein crystallography data

The structure of Crystal Structure of the Prefoldin BETA2 Subunit From Thermococcus Strain Ks-1, PDB code: 3aei was solved by A.Ohtaki, Y.Sugano, T.Sato, K.Noguchi, H.Miyatake, M.Yohda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.66 / 1.70
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 67.315, 67.315, 92.415, 90.00, 90.00, 90.00
R / Rfree (%) 21 / 24

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Prefoldin BETA2 Subunit From Thermococcus Strain Ks-1 (pdb code 3aei). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of the Prefoldin BETA2 Subunit From Thermococcus Strain Ks-1, PDB code: 3aei:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3aei

Go back to Chlorine Binding Sites List in 3aei
Chlorine binding site 1 out of 3 in the Crystal Structure of the Prefoldin BETA2 Subunit From Thermococcus Strain Ks-1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Prefoldin BETA2 Subunit From Thermococcus Strain Ks-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl101

b:1.3
occ:0.25
OH A:TYR47 3.1 18.7 1.0
CD A:ARG45 3.9 38.4 1.0
CZ A:TYR47 4.0 17.3 1.0
CE2 A:TYR47 4.2 16.9 1.0
NE A:ARG45 4.3 49.1 1.0
CZ A:ARG45 5.0 56.1 1.0

Chlorine binding site 2 out of 3 in 3aei

Go back to Chlorine Binding Sites List in 3aei
Chlorine binding site 2 out of 3 in the Crystal Structure of the Prefoldin BETA2 Subunit From Thermococcus Strain Ks-1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Prefoldin BETA2 Subunit From Thermococcus Strain Ks-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl102

b:1.3
occ:0.25
OH B:TYR47 3.1 16.3 1.0
CZ B:TYR47 4.1 14.7 1.0
CE2 B:TYR47 4.2 17.1 1.0
NE B:ARG45 4.2 47.5 1.0
CD B:ARG45 4.3 35.4 1.0
CZ B:ARG45 4.9 51.9 1.0

Chlorine binding site 3 out of 3 in 3aei

Go back to Chlorine Binding Sites List in 3aei
Chlorine binding site 3 out of 3 in the Crystal Structure of the Prefoldin BETA2 Subunit From Thermococcus Strain Ks-1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Prefoldin BETA2 Subunit From Thermococcus Strain Ks-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl103

b:38.5
occ:0.83
OE2 B:GLU12 2.6 38.3 1.0
O A:HOH159 2.6 53.8 1.0
OE2 B:GLU8 2.6 31.0 1.0
CG B:GLU8 3.4 29.6 1.0
CD B:GLU8 3.4 37.5 1.0
CD B:GLU12 3.5 45.4 1.0
CB B:GLU12 3.8 21.5 1.0
O B:GLU8 4.0 21.2 1.0
CD2 A:LEU80 4.0 24.0 1.0
CG B:GLU12 4.1 33.8 1.0
CD1 A:LEU80 4.2 22.1 1.0
CG A:LEU80 4.2 25.5 1.0
OE1 B:GLU12 4.5 36.8 1.0
C B:GLU8 4.5 19.3 1.0
CB A:GLU76 4.6 22.7 1.0
OE1 B:GLU8 4.6 38.0 1.0
CG A:GLU76 4.7 31.8 1.0
CD2 B:LEU9 4.7 25.1 1.0
CB B:GLU8 4.8 22.8 1.0
CA B:LEU9 4.8 15.2 1.0
N B:LEU9 4.8 19.7 1.0
O A:GLU76 5.0 26.0 1.0
CD A:GLU76 5.0 43.1 1.0

Reference:

M.Sahlan, T.Zako, P.T.Tai, A.Ohtaki, K.Noguchi, M.Maeda, H.Miyatake, N.Dohmae, M.Yohda. Thermodynamic Characterization of the Interaction Between Prefoldin and Group II Chaperonin J.Mol.Biol. V. 399 628 2010.
ISSN: ISSN 0022-2836
PubMed: 20434454
DOI: 10.1016/J.JMB.2010.04.046
Page generated: Sat Dec 12 09:31:17 2020

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