Chlorine in PDB 3ajn: Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis

All present enzymatic activity of Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis:
3.2.1.17;

The structure of Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis, PDB code: 3ajn was solved by L.Ito, K.Shiraki, K.Hasegawa, T.Kumasaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.05
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.510, 78.510, 36.962, 90.00, 90.00, 90.00
R / Rfree (%)	14.6 / 16.3

The structure of Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis (pdb code 3ajn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis, PDB code: 3ajn:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl134 b:10.9 occ:1.00 OH A:TYR23 3.0 8.5 1.0 O A:HOH234 3.3 11.4 1.0 CZ A:TYR23 3.6 8.2 1.0 CE2 A:TYR23 3.7 7.8 1.0 CA A:GLY104 4.2 9.0 1.0 O A:ARG21 4.6 8.8 0.4 O A:ARG21 4.6 10.3 0.6 N A:GLY104 4.7 9.1 1.0 CE1 A:TYR23 4.8 8.2 1.0 CD2 A:TYR23 4.9 7.7 1.0

Chlorine binding site 2 out of 2 in the Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl135 b:17.1 occ:1.00 O A:HOH138 2.6 28.4 1.0 N A:GLY26 3.1 8.7 1.0 OG A:SER24 3.1 14.8 1.0 CA A:GLY26 3.5 8.8 1.0 CA A:GLN121 3.6 15.0 0.5 CB A:SER24 3.6 11.5 1.0 CA A:GLN121 3.6 15.1 0.5 O A:HOH261 3.7 37.8 1.0 CD1 A:ILE124 3.8 23.1 1.0 CB A:GLN121 3.9 17.3 0.5 N A:GLN121 4.0 13.4 0.5 N A:GLN121 4.0 13.4 0.5 N A:LEU25 4.1 9.7 1.0 CB A:GLN121 4.1 18.1 0.5 CG1 A:ILE124 4.1 17.7 1.0 O A:VAL120 4.2 12.3 1.0 C A:LEU25 4.3 8.6 1.0 C A:VAL120 4.3 12.2 1.0 CG A:GLN121 4.3 21.7 0.5 C A:SER24 4.3 9.4 1.0 CG2 A:VAL120 4.4 14.2 1.0 CA A:SER24 4.6 9.6 1.0 C A:GLY26 4.6 8.0 1.0 CA A:LEU25 4.6 9.1 1.0 O A:SER24 4.7 10.3 1.0 N A:ASN27 4.7 7.8 1.0 C A:GLN121 4.8 14.0 0.5 C A:GLN121 4.8 14.2 0.5 CB A:LEU25 4.9 10.3 1.0 O A:GLN121 5.0 13.4 0.5 O A:GLN121 5.0 13.6 0.5

L.Ito, K.Shiraki, M.Makino, K.Hasegawa, T.Kumasaka. Glycine Amide Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation Febs Lett. V. 585 555 2011.
ISSN: ISSN 0014-5793
PubMed: 21237160
DOI: 10.1016/J.FEBSLET.2011.01.008