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Chlorine in PDB 3ajn: Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis

Enzymatic activity of Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis

All present enzymatic activity of Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis:
3.2.1.17;

Protein crystallography data

The structure of Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis, PDB code: 3ajn was solved by L.Ito, K.Shiraki, K.Hasegawa, T.Kumasaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.05
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.510, 78.510, 36.962, 90.00, 90.00, 90.00
R / Rfree (%) 14.6 / 16.3

Other elements in 3ajn:

The structure of Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis (pdb code 3ajn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis, PDB code: 3ajn:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3ajn

Go back to Chlorine Binding Sites List in 3ajn
Chlorine binding site 1 out of 2 in the Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl134

b:10.9
occ:1.00
OH A:TYR23 3.0 8.5 1.0
O A:HOH234 3.3 11.4 1.0
CZ A:TYR23 3.6 8.2 1.0
CE2 A:TYR23 3.7 7.8 1.0
CA A:GLY104 4.2 9.0 1.0
O A:ARG21 4.6 8.8 0.4
O A:ARG21 4.6 10.3 0.6
N A:GLY104 4.7 9.1 1.0
CE1 A:TYR23 4.8 8.2 1.0
CD2 A:TYR23 4.9 7.7 1.0

Chlorine binding site 2 out of 2 in 3ajn

Go back to Chlorine Binding Sites List in 3ajn
Chlorine binding site 2 out of 2 in the Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl135

b:17.1
occ:1.00
O A:HOH138 2.6 28.4 1.0
N A:GLY26 3.1 8.7 1.0
OG A:SER24 3.1 14.8 1.0
CA A:GLY26 3.5 8.8 1.0
CA A:GLN121 3.6 15.0 0.5
CB A:SER24 3.6 11.5 1.0
CA A:GLN121 3.6 15.1 0.5
O A:HOH261 3.7 37.8 1.0
CD1 A:ILE124 3.8 23.1 1.0
CB A:GLN121 3.9 17.3 0.5
N A:GLN121 4.0 13.4 0.5
N A:GLN121 4.0 13.4 0.5
N A:LEU25 4.1 9.7 1.0
CB A:GLN121 4.1 18.1 0.5
CG1 A:ILE124 4.1 17.7 1.0
O A:VAL120 4.2 12.3 1.0
C A:LEU25 4.3 8.6 1.0
C A:VAL120 4.3 12.2 1.0
CG A:GLN121 4.3 21.7 0.5
C A:SER24 4.3 9.4 1.0
CG2 A:VAL120 4.4 14.2 1.0
CA A:SER24 4.6 9.6 1.0
C A:GLY26 4.6 8.0 1.0
CA A:LEU25 4.6 9.1 1.0
O A:SER24 4.7 10.3 1.0
N A:ASN27 4.7 7.8 1.0
C A:GLN121 4.8 14.0 0.5
C A:GLN121 4.8 14.2 0.5
CB A:LEU25 4.9 10.3 1.0
O A:GLN121 5.0 13.4 0.5
O A:GLN121 5.0 13.6 0.5

Reference:

L.Ito, K.Shiraki, M.Makino, K.Hasegawa, T.Kumasaka. Glycine Amide Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation Febs Lett. V. 585 555 2011.
ISSN: ISSN 0014-5793
PubMed: 21237160
DOI: 10.1016/J.FEBSLET.2011.01.008
Page generated: Sat Dec 12 09:31:27 2020

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