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Chlorine in PDB 3asx: Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid

Enzymatic activity of Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid

All present enzymatic activity of Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid:
2.5.1.21;

Protein crystallography data

The structure of Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid, PDB code: 3asx was solved by H.Shimizu, M.Suzuki, S.Katakura, K.Yamazaki, N.Higashihashi, M.Ichikawa, A.Yokomizo, M.Itoh, K.Sugita, H.Usui, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 76.70 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 87.069, 59.837, 85.447, 90.00, 116.66, 90.00
R / Rfree (%) 17.4 / 22.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid (pdb code 3asx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid, PDB code: 3asx:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3asx

Go back to Chlorine Binding Sites List in 3asx
Chlorine binding site 1 out of 2 in the Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1

b:18.5
occ:1.00
CL1 A:D991 0.0 18.5 1.0
C9 A:D991 1.8 18.0 1.0
C10 A:D991 2.7 19.6 1.0
C8 A:D991 2.7 17.8 1.0
C7 A:D991 3.1 17.8 1.0
C6 A:D991 3.4 17.1 1.0
C24 A:D991 3.7 15.2 1.0
CD1 A:LEU211 3.8 15.7 1.0
CG1 A:VAL179 3.9 14.8 1.0
C5 A:D991 4.0 15.3 1.0
C1 A:D991 4.0 13.7 1.0
C11 A:D991 4.0 19.7 1.0
C13 A:D991 4.1 15.9 1.0
C28 A:D991 4.1 11.9 1.0
CA A:GLY208 4.2 10.3 1.0
N A:GLY180 4.2 13.8 1.0
N1 A:D991 4.3 17.5 1.0
CB A:VAL179 4.3 13.6 1.0
CD1 A:LEU183 4.4 16.1 1.0
CA A:GLY180 4.4 13.2 1.0
C25 A:D991 4.5 14.7 1.0
O1 A:D991 4.5 19.4 1.0
C12 A:D991 4.6 20.2 1.0
O A:ALA176 4.6 12.3 1.0
N A:GLY208 4.6 10.9 1.0
C A:VAL179 4.7 13.3 1.0
C27 A:D991 4.8 13.1 1.0
C4 A:D991 4.9 18.9 1.0
O A:MET207 4.9 13.3 1.0
O A:HOH405 4.9 16.9 1.0
C2 A:D991 4.9 15.2 1.0

Chlorine binding site 2 out of 2 in 3asx

Go back to Chlorine Binding Sites List in 3asx
Chlorine binding site 2 out of 2 in the Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1

b:23.0
occ:1.00
CL2 A:D991 0.0 23.0 1.0
C4 A:D991 1.8 18.9 1.0
C3 A:D991 2.8 16.4 1.0
C5 A:D991 2.8 15.3 1.0
CD2 A:LEU183 3.9 18.4 1.0
CD1 A:LEU183 3.9 16.1 1.0
CD2 A:TYR73 4.0 32.2 1.0
CB A:TYR73 4.0 20.9 1.0
CA A:TYR73 4.1 20.8 1.0
C6 A:D991 4.1 17.1 1.0
C2 A:D991 4.1 15.2 1.0
CG1 A:VAL179 4.2 14.8 1.0
CD1 A:LEU76 4.2 15.9 1.0
N A:TYR73 4.3 20.0 1.0
CG A:LEU183 4.3 13.0 1.0
CG A:TYR73 4.5 27.5 1.0
CZ A:PHE288 4.5 16.2 1.0
CD1 A:PHE72 4.6 14.2 1.0
C1 A:D991 4.6 13.7 1.0
CG1 A:VAL69 4.7 15.3 1.0
O A:VAL69 4.7 19.9 1.0
C A:PHE72 4.9 18.8 1.0

Reference:

M.Ichikawa, A.Yokomizo, M.Itoh, K.Sugita, H.Usui, H.Shimizu, M.Suzuki, K.Terayama, A.Kanda. Discovery of A New 2-Aminobenzhydrol Template For Highly Potent Squalene Synthase Inhibitors Bioorg.Med.Chem. V. 19 1930 2011.
ISSN: ISSN 0968-0896
PubMed: 21353782
DOI: 10.1016/J.BMC.2011.01.065
Page generated: Sat Jul 20 16:02:42 2024

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