Atomistry » Chlorine » PDB 3akf-3avg » 3asx
Atomistry »
  Chlorine »
    PDB 3akf-3avg »
      3asx »

Chlorine in PDB 3asx: Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid

Enzymatic activity of Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid

All present enzymatic activity of Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid:
2.5.1.21;

Protein crystallography data

The structure of Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid, PDB code: 3asx was solved by H.Shimizu, M.Suzuki, S.Katakura, K.Yamazaki, N.Higashihashi, M.Ichikawa, A.Yokomizo, M.Itoh, K.Sugita, H.Usui, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 76.70 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 87.069, 59.837, 85.447, 90.00, 116.66, 90.00
R / Rfree (%) 17.4 / 22.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid (pdb code 3asx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid, PDB code: 3asx:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3asx

Go back to Chlorine Binding Sites List in 3asx
Chlorine binding site 1 out of 2 in the Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1

b:18.5
occ:1.00
CL1 A:D991 0.0 18.5 1.0
C9 A:D991 1.8 18.0 1.0
C10 A:D991 2.7 19.6 1.0
C8 A:D991 2.7 17.8 1.0
C7 A:D991 3.1 17.8 1.0
C6 A:D991 3.4 17.1 1.0
C24 A:D991 3.7 15.2 1.0
CD1 A:LEU211 3.8 15.7 1.0
CG1 A:VAL179 3.9 14.8 1.0
C5 A:D991 4.0 15.3 1.0
C1 A:D991 4.0 13.7 1.0
C11 A:D991 4.0 19.7 1.0
C13 A:D991 4.1 15.9 1.0
C28 A:D991 4.1 11.9 1.0
CA A:GLY208 4.2 10.3 1.0
N A:GLY180 4.2 13.8 1.0
N1 A:D991 4.3 17.5 1.0
CB A:VAL179 4.3 13.6 1.0
CD1 A:LEU183 4.4 16.1 1.0
CA A:GLY180 4.4 13.2 1.0
C25 A:D991 4.5 14.7 1.0
O1 A:D991 4.5 19.4 1.0
C12 A:D991 4.6 20.2 1.0
O A:ALA176 4.6 12.3 1.0
N A:GLY208 4.6 10.9 1.0
C A:VAL179 4.7 13.3 1.0
C27 A:D991 4.8 13.1 1.0
C4 A:D991 4.9 18.9 1.0
O A:MET207 4.9 13.3 1.0
O A:HOH405 4.9 16.9 1.0
C2 A:D991 4.9 15.2 1.0

Chlorine binding site 2 out of 2 in 3asx

Go back to Chlorine Binding Sites List in 3asx
Chlorine binding site 2 out of 2 in the Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human Squalene Synthase in Complex with 1-{4-[{4-Chloro-2-[(2- Chlorophenyl)(Hydroxy)Methyl]Phenyl}(2,2-Dimethylpropyl)Amino]-4- Oxobutanoyl}Piperidine-3-Carboxylic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1

b:23.0
occ:1.00
CL2 A:D991 0.0 23.0 1.0
C4 A:D991 1.8 18.9 1.0
C3 A:D991 2.8 16.4 1.0
C5 A:D991 2.8 15.3 1.0
CD2 A:LEU183 3.9 18.4 1.0
CD1 A:LEU183 3.9 16.1 1.0
CD2 A:TYR73 4.0 32.2 1.0
CB A:TYR73 4.0 20.9 1.0
CA A:TYR73 4.1 20.8 1.0
C6 A:D991 4.1 17.1 1.0
C2 A:D991 4.1 15.2 1.0
CG1 A:VAL179 4.2 14.8 1.0
CD1 A:LEU76 4.2 15.9 1.0
N A:TYR73 4.3 20.0 1.0
CG A:LEU183 4.3 13.0 1.0
CG A:TYR73 4.5 27.5 1.0
CZ A:PHE288 4.5 16.2 1.0
CD1 A:PHE72 4.6 14.2 1.0
C1 A:D991 4.6 13.7 1.0
CG1 A:VAL69 4.7 15.3 1.0
O A:VAL69 4.7 19.9 1.0
C A:PHE72 4.9 18.8 1.0

Reference:

M.Ichikawa, A.Yokomizo, M.Itoh, K.Sugita, H.Usui, H.Shimizu, M.Suzuki, K.Terayama, A.Kanda. Discovery of A New 2-Aminobenzhydrol Template For Highly Potent Squalene Synthase Inhibitors Bioorg.Med.Chem. V. 19 1930 2011.
ISSN: ISSN 0968-0896
PubMed: 21353782
DOI: 10.1016/J.BMC.2011.01.065
Page generated: Sat Dec 12 09:31:50 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy