Atomistry » Chlorine » PDB 3avi-3b0n » 3aw8
Atomistry »
  Chlorine »
    PDB 3avi-3b0n »
      3aw8 »

Chlorine in PDB 3aw8: Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Synthetase From Thermus Thermophilus HB8

Enzymatic activity of Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Synthetase From Thermus Thermophilus HB8

All present enzymatic activity of Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Synthetase From Thermus Thermophilus HB8:
6.3.4.18;

Protein crystallography data

The structure of Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Synthetase From Thermus Thermophilus HB8, PDB code: 3aw8 was solved by K.Okada, S.Tsunoda, H.Taka, S.Baba, M.Kanagawa, N.Nakagawa, A.Ebihara, S.Kuramitsu, S.Yokoyama, G.Kawai, G.Sampei, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.06 / 2.60
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 81.260, 81.260, 203.163, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 25.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Synthetase From Thermus Thermophilus HB8 (pdb code 3aw8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Synthetase From Thermus Thermophilus HB8, PDB code: 3aw8:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3aw8

Go back to Chlorine Binding Sites List in 3aw8
Chlorine binding site 1 out of 3 in the Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Synthetase From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Synthetase From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl371

b:45.8
occ:1.00
N A:CYS35 3.3 37.9 1.0
O A:HOH455 3.5 66.0 1.0
CE A:LYS328 3.5 34.6 1.0
SG A:CYS35 3.6 39.5 1.0
CA A:GLY8 3.8 31.6 1.0
CD A:LYS328 3.8 35.9 1.0
CG A:LYS328 3.9 38.5 1.0
CA A:ALA34 3.9 42.1 1.0
O A:GLY7 3.9 34.1 1.0
CB A:CYS35 4.0 36.4 1.0
C A:ALA34 4.1 40.1 1.0
NH1 A:ARG334 4.1 52.3 1.0
CA A:CYS35 4.3 37.3 1.0
NZ A:LYS328 4.4 34.7 1.0
C A:GLY8 4.4 31.4 1.0
N A:GLY8 4.5 30.9 1.0
C A:GLY7 4.5 33.7 1.0
CB A:ALA34 4.6 40.7 1.0
N A:GLN9 4.6 29.9 1.0
O A:GLU33 4.6 45.8 1.0
O A:HOH430 4.7 34.6 1.0
OE1 A:GLN9 4.7 27.4 1.0
N A:ALA34 4.9 43.6 1.0
CB A:LYS328 5.0 37.1 1.0

Chlorine binding site 2 out of 3 in 3aw8

Go back to Chlorine Binding Sites List in 3aw8
Chlorine binding site 2 out of 3 in the Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Synthetase From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Synthetase From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl371

b:47.7
occ:1.00
CD B:LYS328 3.2 36.3 1.0
N B:CYS35 3.3 37.5 1.0
O B:HOH466 3.5 57.1 1.0
SG B:CYS35 3.7 38.5 1.0
CA B:GLY8 3.8 29.2 1.0
CA B:ALA34 3.8 41.8 1.0
CG B:LYS328 4.1 36.6 1.0
O B:GLY7 4.1 29.5 1.0
C B:ALA34 4.1 39.8 1.0
CB B:CYS35 4.1 36.4 1.0
CE B:LYS328 4.2 36.0 1.0
NZ B:LYS328 4.3 34.1 1.0
CA B:CYS35 4.3 37.8 1.0
NH1 B:ARG334 4.4 55.4 1.0
C B:GLY8 4.4 30.1 1.0
N B:GLY8 4.5 29.8 1.0
C B:GLY7 4.5 30.8 1.0
CB B:ALA34 4.7 41.2 1.0
N B:GLN9 4.7 29.6 1.0
O B:GLU33 4.7 46.4 1.0
N B:ALA34 4.8 44.5 1.0
OE1 B:GLN9 4.8 29.3 1.0

Chlorine binding site 3 out of 3 in 3aw8

Go back to Chlorine Binding Sites List in 3aw8
Chlorine binding site 3 out of 3 in the Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Synthetase From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Synthetase From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl372

b:53.6
occ:1.00
O B:HOH445 2.9 40.5 1.0
OG B:SER277 3.1 37.9 1.0
CB B:SER277 3.5 37.2 1.0
CB B:ALA17 3.6 33.7 1.0
CG2 B:ILE271 3.8 37.1 1.0
CG1 B:ILE271 3.9 34.8 1.0
CD2 B:PHE279 4.0 33.0 1.0
CA B:ALA17 4.2 35.3 1.0
CB B:PHE279 4.3 32.6 1.0
CB B:ILE271 4.3 38.7 1.0
CA B:ILE271 4.5 40.7 1.0
CD1 B:ILE271 4.5 30.8 1.0
CG B:PHE279 4.6 31.5 1.0
N B:ALA17 4.6 34.7 1.0
O B:MET13 4.7 29.9 1.0
O B:HOH405 4.9 33.8 1.0
O B:HOH457 4.9 52.0 1.0
CE2 B:PHE279 4.9 31.9 1.0

Reference:

K.Okada, H.Taka, S.Tsunoda, S.Tamura, R.Miyazawa, S.Baba, M.Kanagawa, N.Nakagawa, A.Ebihara, S.Kuramitsu, S.Yokoyama, G.Kawai, G.Sampei. Crystal Structures of N5-Carboxyaminoimidazole Ribonucleotide Synthetase, Purk, From Thermophilic Bacteria To Be Published.
Page generated: Fri Jul 11 03:14:55 2025

Last articles

Cl in 3LGY
Cl in 3LFS
Cl in 3LF1
Cl in 3LFA
Cl in 3LDV
Cl in 3LEZ
Cl in 3LEP
Cl in 3LCE
Cl in 3LE6
Cl in 3LD6
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy