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Chlorine in PDB 3b9t: Crystal Structure of Predicted Acetamidase/Formamidase (YP_546212.1) From Methylobacillus Flagellatus Kt at 1.58 A Resolution

Protein crystallography data

The structure of Crystal Structure of Predicted Acetamidase/Formamidase (YP_546212.1) From Methylobacillus Flagellatus Kt at 1.58 A Resolution, PDB code: 3b9t was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.81 / 1.58
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 62.165, 82.723, 83.576, 107.82, 105.81, 95.18
R / Rfree (%) 13.8 / 17.7

Other elements in 3b9t:

The structure of Crystal Structure of Predicted Acetamidase/Formamidase (YP_546212.1) From Methylobacillus Flagellatus Kt at 1.58 A Resolution also contains other interesting chemical elements:

Magnesium (Mg) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Predicted Acetamidase/Formamidase (YP_546212.1) From Methylobacillus Flagellatus Kt at 1.58 A Resolution (pdb code 3b9t). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Predicted Acetamidase/Formamidase (YP_546212.1) From Methylobacillus Flagellatus Kt at 1.58 A Resolution, PDB code: 3b9t:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3b9t

Go back to Chlorine Binding Sites List in 3b9t
Chlorine binding site 1 out of 2 in the Crystal Structure of Predicted Acetamidase/Formamidase (YP_546212.1) From Methylobacillus Flagellatus Kt at 1.58 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Predicted Acetamidase/Formamidase (YP_546212.1) From Methylobacillus Flagellatus Kt at 1.58 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl486

b:17.8
occ:1.00
O A:HOH658 3.1 28.2 1.0
O C:HOH630 3.1 20.8 1.0
N A:SER67 3.2 13.1 1.0
OG A:SER67 3.3 11.6 1.0
CB A:SER67 3.7 13.5 1.0
CG2 C:THR81 3.8 13.4 1.0
CA A:THR66 3.9 20.5 1.0
C A:THR66 4.1 14.8 1.0
CA A:SER67 4.1 12.4 1.0
O A:LEU65 4.2 28.6 1.0
CG2 A:THR66 4.5 26.3 1.0
CB C:LYS80 4.7 18.0 1.0
CB A:THR66 4.7 21.6 1.0
OG1 A:THR66 4.9 28.9 1.0
N A:THR66 5.0 22.4 1.0

Chlorine binding site 2 out of 2 in 3b9t

Go back to Chlorine Binding Sites List in 3b9t
Chlorine binding site 2 out of 2 in the Crystal Structure of Predicted Acetamidase/Formamidase (YP_546212.1) From Methylobacillus Flagellatus Kt at 1.58 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Predicted Acetamidase/Formamidase (YP_546212.1) From Methylobacillus Flagellatus Kt at 1.58 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl486

b:39.4
occ:1.00
N D:GLY476 3.0 13.8 1.0
ND2 B:ASN236 3.0 15.5 1.0
O D:HOH897 3.4 45.9 1.0
O D:ASP391 3.4 13.3 1.0
CA D:GLY476 3.5 15.6 1.0
N D:LYS475 3.7 11.6 1.0
CB D:ASP391 3.8 19.8 1.0
CB D:LYS474 4.0 15.0 1.0
CG B:ASN236 4.0 14.4 1.0
CD D:LYS474 4.1 28.3 1.0
C D:LYS475 4.1 12.8 1.0
OD1 B:ASN236 4.2 17.6 1.0
C D:LYS474 4.3 13.0 1.0
CA D:LYS475 4.3 11.1 1.0
C D:ASP391 4.3 14.1 1.0
CA D:ASP391 4.3 13.9 1.0
CG D:ASP391 4.4 21.0 1.0
OD1 D:ASP391 4.4 28.2 1.0
O B:HOH770 4.4 37.6 1.0
CA D:LYS474 4.4 12.1 1.0
CB D:LYS475 4.5 11.7 1.0
CG D:LYS474 4.6 19.6 1.0
C D:GLY476 4.7 16.6 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Jul 20 16:26:16 2024

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