Chlorine in PDB 3bit: Crystal Structure of Yeast SPT16 N-Terminal Domain

The structure of Crystal Structure of Yeast SPT16 N-Terminal Domain, PDB code: 3bit was solved by A.P.Vandemark, H.Xin, L.Mccullough, R.Rawlins, S.Bentley, A.Heroux, S.J.David, C.P.Hill, T.Formosa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.88 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	40.683, 144.635, 88.513, 90.00, 101.44, 90.00
R / Rfree (%)	16.7 / 22.4

The binding sites of Chlorine atom in the Crystal Structure of Yeast SPT16 N-Terminal Domain (pdb code 3bit). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Yeast SPT16 N-Terminal Domain, PDB code: 3bit:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Crystal Structure of Yeast SPT16 N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Yeast SPT16 N-Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl454 b:18.4 occ:1.00 O A:HOH586 3.1 23.9 1.0 O A:HOH462 3.2 11.9 1.0 N A:VAL271 3.3 25.3 1.0 ND2 A:ASN363 3.3 12.0 1.0 NH1 A:ARG373 3.4 18.2 0.5 NH2 A:ARG373 3.4 18.8 0.5 CA A:ARG270 3.6 20.6 0.5 CA A:ARG270 3.6 21.3 0.5 CZ A:ARG373 3.8 16.7 0.5 NH2 A:ARG373 3.8 14.3 0.5 CB A:ARG270 3.9 22.6 0.5 C A:ARG270 3.9 22.5 0.5 CG2 A:VAL271 3.9 34.5 1.0 C A:ARG270 3.9 22.3 0.5 O A:HOH630 4.0 25.1 1.0 CG1 A:VAL271 4.1 32.6 1.0 CG A:ARG270 4.1 21.5 0.5 CB A:ARG270 4.1 23.6 0.5 O A:HOH755 4.2 25.2 1.0 CZ A:ARG373 4.3 20.0 0.5 O A:HOH672 4.3 25.6 1.0 CG A:ASN363 4.3 14.2 1.0 CB A:VAL271 4.3 32.0 1.0 CA A:VAL271 4.3 28.4 1.0 CG A:ARG270 4.4 25.4 0.5 OD1 A:ASN363 4.4 12.3 1.0 O A:LEU269 4.5 17.0 1.0 NE A:ARG373 4.5 18.9 0.5 O A:HOH646 4.5 25.5 1.0 O A:HOH906 4.7 46.2 1.0 O A:HOH725 4.7 32.3 1.0 O A:HOH614 4.8 16.4 1.0 NE A:ARG373 4.8 17.6 0.5 N A:ARG270 4.8 17.9 0.5 N A:ARG270 4.8 18.3 0.5 CD A:ARG270 4.9 23.6 0.5

Chlorine binding site 2 out of 4 in the Crystal Structure of Yeast SPT16 N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Yeast SPT16 N-Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl455 b:23.5 occ:1.00 ND2 A:ASN380 3.1 19.6 1.0 ND2 A:ASN363 3.3 12.0 1.0 O A:HOH755 3.5 25.2 1.0 CB A:ASN363 3.8 15.3 1.0 O A:LYS362 4.0 18.1 1.0 CB A:LYS362 4.0 19.2 1.0 CG A:ASN363 4.1 14.2 1.0 CG A:ASN380 4.1 19.3 1.0 C A:LYS362 4.1 17.0 1.0 CB A:ASN380 4.2 16.3 1.0 O A:HOH906 4.2 46.2 1.0 N A:ASN363 4.3 15.7 1.0 CG2 A:ILE378 4.5 13.4 1.0 O A:HOH586 4.6 23.9 1.0 NH1 A:ARG373 4.6 18.2 0.5 CA A:ASN363 4.7 15.3 1.0 O A:HOH750 4.7 40.0 1.0 CA A:LYS362 4.7 17.9 1.0 O A:HOH468 4.8 16.0 1.0 NH2 A:ARG373 4.9 18.8 0.5

Chlorine binding site 3 out of 4 in the Crystal Structure of Yeast SPT16 N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Yeast SPT16 N-Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl456 b:16.2 occ:1.00 O B:HOH746 3.0 23.4 1.0 O B:HOH707 3.2 13.1 1.0 N B:VAL271 3.2 17.4 1.0 NH2 B:ARG373 3.4 28.4 1.0 ND2 B:ASN363 3.4 10.0 1.0 CA B:ARG270 3.6 15.5 1.0 CG1 B:VAL271 3.7 21.0 1.0 C B:ARG270 3.9 15.7 1.0 CB B:ARG270 4.0 15.5 1.0 CG2 B:VAL271 4.0 19.7 1.0 O B:HOH1028 4.0 38.3 1.0 O B:HOH748 4.0 30.9 1.0 CZ B:ARG373 4.1 28.5 1.0 CB B:VAL271 4.2 19.1 1.0 CG B:ARG270 4.2 18.5 1.0 O B:HOH881 4.2 30.2 1.0 CA B:VAL271 4.2 18.9 1.0 O1 B:BME459 4.3 29.8 1.0 CG B:ASN363 4.4 11.8 1.0 NE B:ARG373 4.4 27.4 1.0 OD1 B:ASN363 4.5 9.6 1.0 O B:LEU269 4.5 14.0 1.0 O B:HOH705 4.7 23.6 1.0 O B:HOH788 4.7 27.1 1.0 N B:ARG270 4.8 14.2 1.0 O B:HOH639 4.9 14.7 1.0 C1 B:BME459 5.0 34.4 1.0 NH1 B:ARG373 5.0 27.7 1.0

Chlorine binding site 4 out of 4 in the Crystal Structure of Yeast SPT16 N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Yeast SPT16 N-Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl457 b:22.1 occ:1.00 O B:HOH850 2.8 29.3 1.0 ND2 B:ASN363 3.2 10.0 1.0 ND2 B:ASN380 3.4 16.8 1.0 O B:HOH881 3.6 30.2 1.0 CB B:ASN363 3.8 12.7 1.0 O B:LYS362 3.9 14.9 1.0 CG B:ASN363 4.0 11.8 1.0 C B:LYS362 4.1 15.6 1.0 CB B:ASN380 4.1 14.2 1.0 CB B:LYS362 4.1 18.4 1.0 CG B:ASN380 4.2 15.1 1.0 N B:ASN363 4.3 13.7 1.0 NH2 B:ARG373 4.5 28.4 1.0 O B:HOH885 4.6 27.4 1.0 CA B:ASN363 4.6 13.0 1.0 CG2 B:ILE378 4.6 11.4 1.0 CA B:LYS362 4.7 16.4 1.0 O B:HOH746 5.0 23.4 1.0

A.P.Vandemark, H.Xin, L.Mccullough, R.Rawlins, S.Bentley, A.Heroux, D.J.Stillman, C.P.Hill, T.Formosa. Structural and Functional Analysis of the SPT16P N-Terminal Domain Reveals Overlapping Roles of Yfact Subunits. J.Biol.Chem. V. 283 5058 2008.
ISSN: ISSN 0021-9258
PubMed: 18089575
DOI: 10.1074/JBC.M708682200