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Chlorine in PDB 3c17: Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation

Enzymatic activity of Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation

All present enzymatic activity of Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation:
3.4.19.5; 3.5.1.1;

Protein crystallography data

The structure of Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation, PDB code: 3c17 was solved by K.Michalska, A.Hernandez-Santoyo, M.Jaskolski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.51 / 1.95
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 149.470, 149.470, 214.350, 90.00, 90.00, 120.00
R / Rfree (%) 18.4 / 20.3

Other elements in 3c17:

The structure of Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation also contains other interesting chemical elements:

Sodium (Na) 11 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 17;

Binding sites:

The binding sites of Chlorine atom in the Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation (pdb code 3c17). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 17 binding sites of Chlorine where determined in the Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation, PDB code: 3c17:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 17 in 3c17

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Chlorine binding site 1 out of 17 in the Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl326

b:44.8
occ:1.00
 O B:HOH454 2.8 34.6 1.0
O B:HOH390 3.0 35.1 1.0
O A:HOH440 3.1 37.3 1.0
O B:HOH491 3.2 35.9 1.0
O A:HOH526 3.2 40.8 1.0
CD1 B:LEU92 3.7 32.9 1.0
O A:HOH448 4.0 38.9 1.0
CD1 A:LEU271 4.1 37.8 1.0
CE A:LYS267 4.2 40.8 1.0
NA B:NA323 4.3 48.0 1.0
O A:HOH489 4.4 43.0 1.0
CG A:LEU271 4.4 38.0 1.0
CB A:LYS267 4.8 36.5 1.0
CD2 A:LEU271 4.9 37.6 1.0
CG A:LYS267 5.0 39.9 1.0
O A:LYS267 5.0 34.9 1.0

Chlorine binding site 2 out of 17 in 3c17

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Chlorine binding site 2 out of 17 in the Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl327

b:50.4
occ:1.00
 N A:ALA18 3.1 36.7 1.0
N A:ARG17 3.4 36.9 1.0
CB A:ALA18 3.5 37.5 1.0
O A:ILE15 3.7 36.2 1.0
CA A:ALA18 3.9 37.3 1.0
C A:SER16 3.9 37.2 1.0
CG2 A:ILE15 3.9 34.0 1.0
CA A:ARG17 4.0 37.0 1.0
C A:ARG17 4.0 36.8 1.0
CA A:SER16 4.1 37.1 1.0
CB A:ARG17 4.1 37.3 1.0
C A:ILE15 4.2 35.5 1.0
N A:SER16 4.4 36.1 1.0
O A:SER16 4.7 37.5 1.0
CB A:ILE15 4.9 34.4 1.0

Chlorine binding site 3 out of 17 in 3c17

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Chlorine binding site 3 out of 17 in the Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl328

b:31.9
occ:1.00
 O A:HOH464 3.1 37.5 1.0
N A:ILE310 3.2 31.5 1.0
N A:TYR311 3.3 32.4 1.0
CA A:GLY309 3.9 32.9 1.0
CB A:TYR311 4.1 33.8 1.0
CD2 A:TYR311 4.1 35.1 1.0
C A:GLY309 4.1 31.9 1.0
CA A:TYR311 4.1 34.0 1.0
CA A:ILE310 4.1 31.7 1.0
C A:ILE310 4.2 32.1 1.0
CG A:TYR311 4.4 34.3 1.0
CB A:ILE310 4.4 32.1 1.0
C A:TYR311 4.6 35.5 1.0
O A:ARG312 4.8 42.3 1.0
O A:TYR311 4.8 34.6 1.0
O A:HOH397 4.8 34.5 1.0

Chlorine binding site 4 out of 17 in 3c17

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Chlorine binding site 4 out of 17 in the Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl329

b:32.5
occ:1.00
 O A:HOH481 2.9 37.1 1.0
O A:HOH405 3.0 43.3 1.0
N A:GLU293 3.3 32.4 1.0
CA A:ALA14 3.7 32.9 1.0
N A:ALA14 3.7 33.0 1.0
CG A:GLU293 3.7 32.5 1.0
CA A:THR292 3.7 31.9 1.0
CB A:THR292 3.8 31.9 1.0
C A:GLY13 3.8 32.9 1.0
O A:GLY13 3.9 33.4 1.0
CB A:ALA14 3.9 32.9 1.0
C A:THR292 4.0 31.9 1.0
CG2 A:THR292 4.0 31.4 1.0
CB A:GLU293 4.3 32.6 1.0
CD A:GLU293 4.3 35.6 1.0
CA A:GLU293 4.4 32.4 1.0
CA A:GLY13 4.6 33.2 1.0
NZ A:LYS174 4.7 49.0 1.0
O A:HOH436 4.7 31.2 1.0
OE2 A:GLU293 4.8 36.8 1.0
OE1 A:GLU293 4.9 36.6 1.0

Chlorine binding site 5 out of 17 in 3c17

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Chlorine binding site 5 out of 17 in the Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl330

b:31.7
occ:1.00
 NA A:NA324 2.7 26.7 1.0
NH2 A:ARG207 2.9 37.3 1.0
NH1 A:ARG207 3.1 37.4 1.0
O A:HOH363 3.2 27.6 1.0
N A:GLY233 3.4 38.5 1.0
CZ A:ARG207 3.5 38.5 1.0
CA A:GLY233 3.5 37.4 1.0
O A:GLY231 3.6 37.5 1.0
O A:HOH374 3.7 27.1 1.0
O A:LYS176 3.9 35.2 1.0
OD1 A:ASP210 4.0 35.7 1.0
CA A:GLY209 4.0 34.7 1.0
O A:HOH375 4.1 23.5 1.0
CB A:LYS176 4.3 35.3 1.0
N A:ASP210 4.4 35.0 1.0
C A:THR232 4.5 38.3 1.0
CD A:LYS176 4.6 39.5 1.0
C A:GLY209 4.7 34.6 1.0
C A:GLY231 4.8 36.3 1.0
O A:HOH364 4.8 27.8 1.0
C A:LYS176 4.8 35.0 1.0
NE A:ARG207 4.8 38.0 1.0
O A:GLY199 4.8 37.4 1.0
C A:GLY233 4.8 36.1 1.0
CA A:LYS176 4.9 35.6 1.0
CA A:THR232 4.9 37.1 1.0
N A:GLY209 4.9 34.0 1.0
CG A:LYS176 4.9 38.4 1.0

Chlorine binding site 6 out of 17 in 3c17

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Chlorine binding site 6 out of 17 in the Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl331

b:46.8
occ:1.00
 O B:HOH443 3.1 37.9 1.0
O A:HOH347 3.1 42.3 1.0
O B:HOH383 3.2 33.0 1.0
NH1 A:ARG238 3.4 32.4 1.0
CD A:ARG238 3.7 32.5 1.0
CG2 B:VAL120 3.8 34.7 1.0
CZ A:ARG238 4.0 32.6 1.0
CB A:GLU234 4.0 34.9 1.0
NE A:ARG238 4.0 33.5 1.0
O B:PRO118 4.3 34.7 1.0
CG A:GLU234 4.3 36.0 1.0
CG B:LYS93 4.4 34.4 1.0
CE B:LYS93 4.4 35.8 1.0
NA B:NA324 4.5 31.9 1.0
O B:HIS119 4.7 33.5 1.0
CG A:ARG238 4.9 33.5 1.0
C B:HIS119 4.9 33.8 1.0
NH2 A:ARG238 4.9 32.4 1.0
C B:PRO118 4.9 34.9 1.0
CD B:LYS93 4.9 34.9 1.0
CB B:LYS93 5.0 33.4 1.0

Chlorine binding site 7 out of 17 in 3c17

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Chlorine binding site 7 out of 17 in the Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl332

b:32.8
occ:1.00
 O A:HOH554 3.2 32.1 1.0
NE2 A:GLN23 3.3 29.3 1.0
CG A:GLN23 3.8 31.2 1.0
CD2 A:LEU22 4.0 26.8 1.0
CD A:GLN23 4.0 31.4 1.0
CB A:LEU22 4.1 30.4 1.0
CG A:LEU22 4.3 29.8 1.0
N A:GLN23 4.5 30.2 1.0
CB A:GLN23 4.9 30.9 1.0

Chlorine binding site 8 out of 17 in 3c17

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Chlorine binding site 8 out of 17 in the Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl333

b:35.8
occ:1.00
 O B:HOH494 3.1 48.9 1.0
O B:HOH388 3.1 42.6 1.0
O A:HOH497 3.2 41.4 1.0
NZ A:LYS267 3.3 38.8 1.0
NH1 A:ARG262 3.3 40.8 1.0
CE1 B:TYR251 3.7 33.4 1.0
CE A:LYS267 3.7 40.8 1.0
CD A:LYS267 3.8 42.0 1.0
OH B:TYR251 3.8 33.4 1.0
CD A:ARG262 3.9 36.7 1.0
CG A:ARG262 4.1 35.1 1.0
CZ B:TYR251 4.2 34.9 1.0
CD2 A:LEU248 4.2 30.6 1.0
CZ A:ARG262 4.3 40.6 1.0
O B:HOH495 4.4 54.5 1.0
O B:HOH527 4.5 49.1 1.0
NE A:ARG262 4.5 39.2 1.0
CG A:LYS267 4.6 39.9 1.0
O B:HOH491 4.6 35.9 1.0
CD1 B:TYR251 4.7 33.5 1.0
O A:HOH448 4.8 38.9 1.0
NA B:NA323 5.0 48.0 1.0

Chlorine binding site 9 out of 17 in 3c17

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Chlorine binding site 9 out of 17 in the Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl334

b:51.0
occ:1.00
 N A:GLU137 3.0 37.5 1.0
CA A:MET136 3.7 36.6 1.0
CB A:GLU137 3.7 38.2 1.0
C A:MET136 3.8 37.1 1.0
CG A:MET136 3.8 36.4 1.0
CA A:GLU137 4.0 37.8 1.0
O A:GLY135 4.1 37.0 1.0
CB A:MET136 4.3 36.8 1.0
O A:HOH378 4.5 34.1 1.0
O A:HOH380 4.5 29.2 1.0
O A:HOH534 4.6 40.1 1.0
N A:MET136 4.7 36.8 1.0
C A:GLY135 4.9 37.0 1.0
O A:HOH502 4.9 51.0 1.0
O A:HOH379 5.0 34.5 1.0
O A:GLU137 5.0 37.8 1.0

Chlorine binding site 10 out of 17 in 3c17

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Chlorine binding site 10 out of 17 in the Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Hexagonal Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active-Site T179A Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl328

b:57.9
occ:1.00
 N B:GLU137 3.0 35.3 1.0
CB B:GLU137 3.6 36.8 1.0
CA B:MET136 3.6 35.0 1.0
CG B:MET136 3.7 36.4 1.0
C B:MET136 3.8 35.0 1.0
CA B:GLU137 3.9 36.1 1.0
O B:GLY135 4.1 34.2 1.0
CB B:MET136 4.2 35.3 1.0
O B:HOH415 4.6 33.2 1.0
O B:HOH502 4.7 38.4 1.0
N B:MET136 4.8 35.0 1.0
O B:HOH424 4.8 38.1 1.0
OE1 B:GLU137 4.8 43.7 1.0
C B:GLY135 4.9 35.2 1.0

Reference:

K.Michalska, A.Hernandez-Santoyo, M.Jaskolski. The Mechanism of Autocatalytic Activation of Plant-Type L-Asparaginases J.Biol.Chem. V. 283 13388 2008.
ISSN: ISSN 0021-9258
PubMed: 18334484
DOI: 10.1074/JBC.M800746200
Page generated: Sat Dec 12 09:34:03 2020

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