Atomistry » Chlorine » PDB 3c4w-3ccl » 3c61
Atomistry »
  Chlorine »
    PDB 3c4w-3ccl »
      3c61 »

Chlorine in PDB 3c61: Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani

Enzymatic activity of Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani

All present enzymatic activity of Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani:
1.3.99.11;

Protein crystallography data

The structure of Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani, PDB code: 3c61 was solved by T.L.Arakaki, E.A.Merritt, Structural Genomics Of Pathogenic Protozoaconsortium (Sgpp), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.88 / 1.80
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 83.869, 83.869, 188.725, 90.00, 90.00, 120.00
R / Rfree (%) 16.6 / 19.6

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani (pdb code 3c61). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 13 binding sites of Chlorine where determined in the Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani, PDB code: 3c61:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 13 in 3c61

Go back to Chlorine Binding Sites List in 3c61
Chlorine binding site 1 out of 13 in the Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl314

b:30.9
occ:1.00
 N A:ARG58 3.1 23.4 1.0
N A:TYR59 3.5 21.8 1.0
CA A:PRO57 3.7 26.4 1.0
C A:PRO57 3.9 24.6 1.0
CG A:ARG58 4.0 24.3 1.0
CG2 A:THR56 4.0 30.0 1.0
CA A:ARG58 4.1 22.8 1.0
O A:TYR59 4.1 20.7 1.0
CB A:THR56 4.2 31.3 1.0
C A:ARG58 4.2 21.7 1.0
CB A:TYR59 4.3 21.7 1.0
CB A:PRO57 4.4 27.0 1.0
CA A:TYR59 4.4 21.4 1.0
CB A:ARG58 4.6 23.2 1.0
CA A:THR56 4.8 30.9 1.0
C A:TYR59 4.8 21.6 1.0
N A:PRO57 4.8 27.8 1.0
CD A:ARG58 5.0 26.9 1.0

Chlorine binding site 2 out of 13 in 3c61

Go back to Chlorine Binding Sites List in 3c61
Chlorine binding site 2 out of 13 in the Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl315

b:27.5
occ:1.00
 OH A:TYR83 2.9 21.3 1.0
O A:HOH613 3.1 29.9 1.0
O A:HOH656 3.2 35.0 1.0
N A:ASP89 3.5 24.4 1.0
OG1 A:THR34 3.7 19.1 1.0
CZ A:TYR83 3.7 19.7 1.0
CB A:THR34 3.8 18.7 1.0
CA A:HIS88 3.8 23.9 1.0
CG2 A:THR34 3.8 20.3 1.0
CE1 A:TYR83 3.8 19.6 1.0
ND1 A:HIS88 4.0 18.9 1.0
O A:GLN87 4.1 25.4 1.0
C A:HIS88 4.1 23.9 1.0
CB A:ASP89 4.2 25.2 1.0
CG2 A:VAL31 4.2 23.6 1.0
CA A:VAL31 4.4 21.6 1.0
CA A:ASP89 4.4 24.6 1.0
N A:HIS88 4.6 24.5 1.0
CG A:HIS88 4.6 21.6 1.0
C A:GLN87 4.6 25.7 1.0
CB A:HIS88 4.6 23.5 1.0
CE1 A:HIS88 4.7 19.6 1.0
O A:LEU30 4.7 20.9 1.0
CB A:VAL31 4.8 22.5 1.0
CG1 A:VAL31 4.9 22.7 1.0
N A:VAL31 4.9 21.1 1.0
CE2 A:TYR83 5.0 21.2 1.0

Chlorine binding site 3 out of 13 in 3c61

Go back to Chlorine Binding Sites List in 3c61
Chlorine binding site 3 out of 13 in the Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl316

b:32.8
occ:1.00
 N A:ALA61 3.2 20.2 1.0
CB A:ALA61 3.8 20.9 1.0
CA A:ARG60 3.8 21.2 1.0
C A:ARG60 4.0 20.3 1.0
CD A:ARG60 4.0 28.2 1.0
CA A:ALA61 4.1 19.8 1.0
O A:TYR59 4.1 20.7 1.0
CD1 A:TYR59 4.2 23.0 1.0
O A:HOH642 4.2 34.2 1.0
CE1 A:TYR59 4.4 23.1 1.0
O A:ALA61 4.6 19.2 1.0
N A:ARG60 4.6 20.2 1.0
C A:TYR59 4.7 21.6 1.0
CB A:ARG60 4.8 20.9 1.0
CG A:ARG60 4.9 24.5 1.0
C A:ALA61 4.9 19.0 1.0

Chlorine binding site 4 out of 13 in 3c61

Go back to Chlorine Binding Sites List in 3c61
Chlorine binding site 4 out of 13 in the Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl314

b:32.5
occ:1.00
 O3P B:FMN401 2.6 20.7 0.8
N B:ALA274 2.9 16.0 1.0
O B:VAL252 2.9 15.8 1.0
N B:THR273 3.3 13.7 1.0
CB B:ALA274 3.4 17.0 1.0
N B:GLY272 3.4 14.6 1.0
P B:FMN401 3.6 16.7 0.8
C B:GLY272 3.7 14.6 1.0
O B:HOH1006 3.7 13.9 1.0
CA B:ALA274 3.7 16.5 1.0
C B:VAL252 3.8 16.0 1.0
C B:THR273 3.8 15.1 1.0
CA B:THR273 3.9 15.2 1.0
N B:VAL252 3.9 16.3 1.0
CG1 B:VAL271 4.0 17.4 1.0
CB B:THR273 4.0 15.7 1.0
CA B:GLY272 4.0 14.2 1.0
O2P B:FMN401 4.1 18.4 0.8
CE1 B:TYR253 4.2 16.1 1.0
O1P B:FMN401 4.2 19.2 0.8
CA B:VAL252 4.3 16.5 1.0
O B:GLY272 4.4 14.2 1.0
C B:VAL271 4.4 15.2 1.0
CD1 B:TYR253 4.4 16.7 1.0
CA B:VAL271 4.5 15.7 1.0
CZ B:TYR253 4.5 18.3 1.0
C B:GLY251 4.6 16.6 1.0
N B:LEU275 4.6 17.9 1.0
N B:GLY251 4.7 16.1 1.0
C B:ALA274 4.8 17.6 1.0
CA B:GLY251 4.8 16.1 1.0
CB B:VAL252 4.8 17.4 1.0
N B:TYR253 4.8 16.5 1.0
OG1 B:THR273 4.9 16.1 1.0
CB B:VAL271 4.9 15.4 1.0
CG B:TYR253 4.9 15.7 1.0
OH B:TYR253 5.0 20.6 1.0
O5' B:FMN401 5.0 17.9 0.8
CA B:GLY223 5.0 15.1 1.0

Chlorine binding site 5 out of 13 in 3c61

Go back to Chlorine Binding Sites List in 3c61
Chlorine binding site 5 out of 13 in the Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl315

b:44.8
occ:1.00
 N B:ARG58 3.1 27.9 1.0
CA B:PRO57 3.5 30.4 1.0
N B:TYR59 3.7 26.4 1.0
C B:PRO57 3.8 29.1 1.0
CB B:PRO57 4.0 30.9 1.0
CG B:ARG58 4.1 29.1 1.0
CA B:ARG58 4.1 27.6 1.0
CG2 B:THR56 4.2 32.6 1.0
CB B:THR56 4.3 32.6 1.0
C B:ARG58 4.3 26.9 1.0
O B:TYR59 4.4 24.7 1.0
CB B:TYR59 4.5 25.8 1.0
CA B:TYR59 4.6 25.8 1.0
CB B:ARG58 4.7 28.3 1.0
CA B:THR56 4.8 32.4 1.0
N B:PRO57 4.8 30.9 1.0
CD B:ARG58 4.9 30.3 1.0
NE B:ARG58 4.9 29.6 1.0

Chlorine binding site 6 out of 13 in 3c61

Go back to Chlorine Binding Sites List in 3c61
Chlorine binding site 6 out of 13 in the Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl316

b:43.5
occ:1.00
 N B:TYR90 3.4 23.0 1.0
O B:HOH1084 3.8 33.1 1.0
CB B:TYR90 3.8 23.1 1.0
O B:HIS88 3.8 22.9 1.0
N B:GLY91 3.9 24.3 1.0
CA B:TYR90 4.0 22.8 1.0
NZ B:LYS121 4.1 30.8 1.0
CD1 B:TYR90 4.1 23.7 1.0
C B:ASP89 4.2 23.4 1.0
OD1 B:ASP89 4.3 28.1 1.0
CA B:ASP89 4.3 24.2 1.0
C B:TYR90 4.3 23.5 1.0
CG B:TYR90 4.5 22.7 1.0
C B:HIS88 4.8 22.8 1.0
O B:HOH1094 4.9 28.6 1.0
CA B:GLY91 4.9 24.7 1.0

Chlorine binding site 7 out of 13 in 3c61

Go back to Chlorine Binding Sites List in 3c61
Chlorine binding site 7 out of 13 in the Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl317

b:27.2
occ:1.00
 OH B:TYR83 3.0 18.8 1.0
O B:HOH1150 3.2 35.1 1.0
N B:ASP89 3.4 23.5 1.0
OG1 B:THR34 3.7 20.2 1.0
CG2 B:THR34 3.7 20.4 1.0
CB B:THR34 3.7 20.4 1.0
CA B:HIS88 3.8 22.1 1.0
CZ B:TYR83 3.8 20.0 1.0
ND1 B:HIS88 3.9 19.1 1.0
CE1 B:TYR83 3.9 20.7 1.0
O B:GLN87 4.0 23.6 1.0
C B:HIS88 4.1 22.8 1.0
CG2 B:VAL31 4.1 21.7 1.0
CB B:ASP89 4.2 24.9 1.0
CA B:VAL31 4.3 21.2 1.0
CA B:ASP89 4.4 24.2 1.0
N B:HIS88 4.5 22.1 1.0
C B:GLN87 4.5 23.2 1.0
CG B:HIS88 4.6 20.1 1.0
CB B:HIS88 4.6 21.1 1.0
CE1 B:HIS88 4.7 18.8 1.0
CB B:VAL31 4.7 21.5 1.0
O B:LEU30 4.8 19.4 1.0
N B:VAL31 4.9 20.7 1.0

Chlorine binding site 8 out of 13 in 3c61

Go back to Chlorine Binding Sites List in 3c61
Chlorine binding site 8 out of 13 in the Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl314

b:45.4
occ:1.00
 N C:ARG58 3.1 27.2 1.0
CA C:PRO57 3.4 30.4 1.0
N C:TYR59 3.7 25.5 1.0
C C:PRO57 3.7 28.9 1.0
OG1 C:THR56 3.8 34.2 1.0
CB C:PRO57 3.9 31.0 1.0
CG C:ARG58 4.1 28.3 1.0
CA C:ARG58 4.1 26.9 1.0
C C:ARG58 4.3 26.1 1.0
O C:TYR59 4.4 24.4 1.0
CB C:TYR59 4.5 25.3 1.0
CA C:TYR59 4.6 25.1 1.0
CB C:ARG58 4.7 27.6 1.0
N C:PRO57 4.7 31.3 1.0
CB C:THR56 4.8 33.5 1.0
CA C:THR56 4.9 33.1 1.0
NE C:ARG58 4.9 29.3 1.0
CD C:ARG58 4.9 29.4 1.0
O C:PRO57 5.0 27.4 1.0

Chlorine binding site 9 out of 13 in 3c61

Go back to Chlorine Binding Sites List in 3c61
Chlorine binding site 9 out of 13 in the Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl315

b:27.3
occ:1.00
 OH C:TYR83 3.0 20.5 1.0
O C:HOH1099 3.2 37.8 1.0
N C:ASP89 3.4 22.7 1.0
OG1 C:THR34 3.7 19.9 1.0
CG2 C:THR34 3.7 19.2 1.0
CB C:THR34 3.7 20.4 1.0
CA C:HIS88 3.8 21.5 1.0
CZ C:TYR83 3.8 21.2 1.0
ND1 C:HIS88 3.9 18.6 1.0
CE1 C:TYR83 4.0 21.2 1.0
O C:GLN87 4.0 22.6 1.0
C C:HIS88 4.0 22.0 1.0
CG2 C:VAL31 4.1 21.0 1.0
CB C:ASP89 4.1 24.0 1.0
CA C:ASP89 4.4 23.6 1.0
CA C:VAL31 4.4 20.8 1.0
C C:GLN87 4.5 22.7 1.0
N C:HIS88 4.5 21.5 1.0
CG C:HIS88 4.6 19.9 1.0
CB C:HIS88 4.6 20.6 1.0
CE1 C:HIS88 4.7 17.7 1.0
CB C:VAL31 4.8 21.2 1.0
CG C:GLN87 4.8 24.1 0.5
O C:LEU30 4.8 19.1 1.0
N C:VAL31 5.0 20.4 1.0

Chlorine binding site 10 out of 13 in 3c61

Go back to Chlorine Binding Sites List in 3c61
Chlorine binding site 10 out of 13 in the Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Dihydroorotate Dehydrogenase From Leishmania Donovani within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl316

b:34.0
occ:1.00
 O C:HOH1145 2.9 37.6 1.0
N C:GLU256 3.2 19.4 1.0
CB C:GLU256 3.6 21.1 1.0
OE1 C:GLU289 3.7 23.2 1.0
CB C:THR254 3.7 19.6 1.0
N C:GLY255 3.7 19.5 1.0
CB C:GLU289 3.8 22.2 1.0
OG1 C:THR254 3.9 18.7 1.0
CD C:GLU289 3.9 23.4 1.0
CA C:GLU256 4.0 19.7 1.0
CG C:GLU289 4.0 22.1 1.0
C C:GLY255 4.0 18.7 1.0
CA C:GLY255 4.1 18.9 1.0
C C:THR254 4.4 19.3 1.0
CG2 C:VAL293 4.4 25.0 1.0
CA C:THR254 4.6 19.2 1.0
CG2 C:THR254 4.6 19.1 1.0
OE2 C:GLU289 4.6 24.2 1.0
O C:GLU289 4.6 22.6 1.0
CA C:GLU289 4.7 22.2 1.0
C C:GLU289 4.9 22.0 1.0
CG C:GLU256 4.9 23.5 1.0

Reference:

T.L.Arakaki, E.A.Merritt, B.Ullman, P.A.Yates. Dihydroorotate Dehydrogenase From Leishmania Donovani. To Be Published.
Page generated: Sat Dec 12 09:34:23 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy