Chlorine in PDB 3cd6: Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
Protein crystallography data
The structure of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin, PDB code: 3cd6
was solved by
G.Blaha,
G.Gurel,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.95 /
2.75
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
212.805,
299.997,
576.002,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.3 /
24.1
|
Other elements in 3cd6:
The structure of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin also contains other interesting chemical elements:
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
22;
Binding sites:
The binding sites of Chlorine atom in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
(pdb code 3cd6). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 22 binding sites of Chlorine where determined in the
Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin, PDB code: 3cd6:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 22 in 3cd6
Go back to
Chlorine Binding Sites List in 3cd6
Chlorine binding site 1 out
of 22 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_01.jpg) Mono view
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl8809
b:88.8
occ:1.00
|
NZ
|
A:LYS178
|
3.2
|
51.0
|
1.0
|
O
|
A:HOH9021
|
3.2
|
50.3
|
1.0
|
CE
|
A:LYS175
|
3.5
|
42.1
|
1.0
|
CE
|
A:MET179
|
3.9
|
48.6
|
1.0
|
O
|
A:HOH8992
|
4.0
|
51.2
|
1.0
|
O
|
0:HOH5281
|
4.0
|
48.7
|
1.0
|
CD
|
A:LYS178
|
4.1
|
47.3
|
1.0
|
CE
|
A:LYS178
|
4.2
|
48.6
|
1.0
|
SD
|
A:MET179
|
4.4
|
47.5
|
1.0
|
NZ
|
A:LYS175
|
4.4
|
45.2
|
1.0
|
CZ
|
A:PHE169
|
4.5
|
37.4
|
1.0
|
CD
|
A:LYS175
|
4.6
|
39.9
|
1.0
|
OP2
|
0:G1878
|
4.6
|
51.7
|
1.0
|
O
|
0:HOH3952
|
4.7
|
67.5
|
1.0
|
CE1
|
A:PHE169
|
4.7
|
38.2
|
1.0
|
O
|
0:HOH3268
|
4.7
|
80.5
|
1.0
|
|
Chlorine binding site 2 out
of 22 in 3cd6
Go back to
Chlorine Binding Sites List in 3cd6
Chlorine binding site 2 out
of 22 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_02.jpg) Mono view
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl8819
b:54.0
occ:1.00
|
O
|
0:HOH9671
|
3.0
|
38.5
|
1.0
|
O
|
0:HOH9602
|
3.0
|
29.0
|
1.0
|
N
|
B:LYS224
|
3.1
|
39.0
|
1.0
|
O
|
B:HOH9009
|
3.2
|
36.7
|
1.0
|
CA
|
B:ARG223
|
3.5
|
40.2
|
1.0
|
O2'
|
0:U2545
|
3.8
|
40.1
|
1.0
|
C
|
B:ARG223
|
3.8
|
40.0
|
1.0
|
CB
|
B:HIS227
|
3.8
|
33.1
|
1.0
|
CD2
|
B:HIS227
|
3.8
|
33.4
|
1.0
|
CB
|
B:ARG223
|
3.9
|
42.8
|
1.0
|
CG
|
B:HIS227
|
4.0
|
32.5
|
1.0
|
O
|
B:LYS224
|
4.1
|
38.7
|
1.0
|
CA
|
B:LYS224
|
4.1
|
36.5
|
1.0
|
O
|
0:HOH6202
|
4.3
|
38.1
|
1.0
|
CB
|
B:LYS224
|
4.3
|
35.6
|
1.0
|
C4'
|
0:U2546
|
4.4
|
32.5
|
1.0
|
C5'
|
0:U2546
|
4.4
|
31.2
|
1.0
|
CD
|
B:ARG223
|
4.4
|
47.0
|
1.0
|
O4'
|
0:U2546
|
4.5
|
32.5
|
1.0
|
CG
|
B:ARG223
|
4.5
|
45.5
|
1.0
|
O
|
B:LYS222
|
4.5
|
41.7
|
1.0
|
C
|
B:LYS224
|
4.6
|
36.3
|
1.0
|
CG
|
B:LYS224
|
4.7
|
34.6
|
1.0
|
N
|
B:ARG223
|
4.8
|
39.4
|
1.0
|
NE2
|
B:HIS227
|
4.9
|
34.2
|
1.0
|
|
Chlorine binding site 3 out
of 22 in 3cd6
Go back to
Chlorine Binding Sites List in 3cd6
Chlorine binding site 3 out
of 22 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_03.jpg) Mono view
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Cl8801
b:68.7
occ:1.00
|
N
|
J:ILE127
|
2.8
|
49.4
|
1.0
|
N
|
J:LYS128
|
3.1
|
46.4
|
1.0
|
O
|
J:HOH9009
|
3.4
|
47.4
|
1.0
|
CA
|
J:ASN126
|
3.7
|
52.1
|
1.0
|
CA
|
J:ILE127
|
3.7
|
49.1
|
1.0
|
CG2
|
J:ILE127
|
3.7
|
48.3
|
1.0
|
C
|
J:ASN126
|
3.7
|
50.4
|
1.0
|
CB
|
J:LYS128
|
3.7
|
46.0
|
1.0
|
CG
|
E:PRO36
|
3.8
|
56.4
|
1.0
|
O
|
J:HOH9008
|
3.8
|
84.0
|
1.0
|
C
|
J:ILE127
|
3.8
|
48.1
|
1.0
|
OD1
|
J:ASN126
|
3.9
|
56.5
|
1.0
|
CA
|
J:LYS128
|
4.0
|
45.2
|
1.0
|
O
|
0:HOH3932
|
4.0
|
76.2
|
1.0
|
CG
|
J:LYS128
|
4.0
|
46.2
|
1.0
|
CB
|
J:ILE127
|
4.2
|
50.6
|
1.0
|
CB
|
J:ASN126
|
4.2
|
54.2
|
1.0
|
CG
|
J:ASN126
|
4.5
|
56.0
|
1.0
|
O
|
J:SER125
|
4.5
|
53.9
|
1.0
|
CD
|
J:LYS128
|
4.6
|
47.9
|
1.0
|
C
|
J:LYS128
|
4.8
|
45.3
|
1.0
|
N
|
J:ASN126
|
4.8
|
52.1
|
1.0
|
CD
|
E:PRO36
|
4.9
|
55.2
|
1.0
|
O
|
J:LYS128
|
4.9
|
44.3
|
1.0
|
CB
|
E:PRO36
|
4.9
|
56.5
|
1.0
|
O
|
J:ASN126
|
4.9
|
49.9
|
1.0
|
|
Chlorine binding site 4 out
of 22 in 3cd6
Go back to
Chlorine Binding Sites List in 3cd6
Chlorine binding site 4 out
of 22 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_04.jpg) Mono view
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Cl8802
b:68.0
occ:1.00
|
N
|
J:LYS90
|
3.3
|
52.9
|
1.0
|
C
|
J:PRO88
|
3.3
|
46.3
|
1.0
|
O
|
J:PRO88
|
3.5
|
45.8
|
1.0
|
CA
|
J:PRO88
|
3.5
|
45.5
|
1.0
|
CB
|
J:LYS90
|
3.6
|
55.0
|
1.0
|
CA
|
J:LYS90
|
3.8
|
55.5
|
1.0
|
N
|
J:HIS89
|
3.8
|
47.2
|
1.0
|
N
|
J:LYS91
|
3.9
|
58.3
|
1.0
|
CB
|
J:PRO88
|
4.0
|
46.0
|
1.0
|
C
|
J:LYS90
|
4.2
|
57.5
|
1.0
|
CG
|
J:LYS91
|
4.3
|
64.4
|
1.0
|
C
|
J:HIS89
|
4.4
|
50.9
|
1.0
|
CG
|
J:LYS90
|
4.5
|
53.3
|
1.0
|
CA
|
J:HIS89
|
4.6
|
49.0
|
1.0
|
CB
|
J:LYS91
|
4.7
|
61.1
|
1.0
|
CA
|
J:LYS91
|
4.9
|
59.7
|
1.0
|
CD
|
J:LYS90
|
4.9
|
51.1
|
1.0
|
N
|
J:PRO88
|
4.9
|
46.1
|
1.0
|
ND1
|
J:HIS89
|
5.0
|
47.2
|
1.0
|
|
Chlorine binding site 5 out
of 22 in 3cd6
Go back to
Chlorine Binding Sites List in 3cd6
Chlorine binding site 5 out
of 22 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_05.jpg) Mono view
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_05_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Cl8821
b:56.6
occ:1.00
|
O
|
0:HOH5802
|
3.0
|
50.7
|
1.0
|
O
|
J:ASN65
|
3.2
|
55.6
|
1.0
|
N
|
J:ASN65
|
3.4
|
54.2
|
1.0
|
CA
|
J:GLY64
|
3.6
|
54.0
|
1.0
|
N
|
J:TYR69
|
3.6
|
57.5
|
1.0
|
CA
|
J:GLY68
|
3.7
|
57.5
|
1.0
|
C
|
J:GLY64
|
3.9
|
55.1
|
1.0
|
C
|
J:ASN65
|
4.2
|
55.2
|
1.0
|
C
|
J:GLY68
|
4.2
|
58.1
|
1.0
|
OP1
|
0:A2678
|
4.2
|
46.2
|
1.0
|
O3'
|
0:A2677
|
4.3
|
46.7
|
1.0
|
CA
|
J:ASN65
|
4.4
|
54.4
|
1.0
|
O
|
J:TYR69
|
4.5
|
59.6
|
1.0
|
N
|
J:GLY68
|
4.5
|
56.0
|
1.0
|
O
|
J:ILE63
|
4.6
|
54.0
|
1.0
|
C
|
J:TYR69
|
4.7
|
59.3
|
1.0
|
CA
|
J:TYR69
|
4.7
|
57.9
|
1.0
|
C5'
|
0:A2677
|
4.8
|
51.8
|
1.0
|
N
|
J:GLY64
|
4.8
|
52.8
|
1.0
|
P
|
0:A2678
|
4.9
|
46.8
|
1.0
|
C4'
|
0:A2677
|
4.9
|
48.9
|
1.0
|
CB
|
J:TYR69
|
5.0
|
56.8
|
1.0
|
O
|
J:GLY64
|
5.0
|
57.0
|
1.0
|
|
Chlorine binding site 6 out
of 22 in 3cd6
Go back to
Chlorine Binding Sites List in 3cd6
Chlorine binding site 6 out
of 22 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_06.jpg) Mono view
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_06_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Cl8810
b:70.7
occ:1.00
|
N
|
L:ARG53
|
3.0
|
61.7
|
1.0
|
NE2
|
L:GLN58
|
3.1
|
96.0
|
1.0
|
CA
|
L:LYS52
|
3.7
|
58.5
|
1.0
|
CB
|
L:ARG53
|
3.8
|
62.4
|
1.0
|
C
|
L:LYS52
|
3.9
|
60.2
|
1.0
|
C5'
|
0:A693
|
3.9
|
57.1
|
1.0
|
CA
|
L:ARG53
|
3.9
|
63.9
|
1.0
|
O
|
L:ARG53
|
4.0
|
66.2
|
1.0
|
CD
|
L:GLN58
|
4.1
|
95.6
|
1.0
|
CG
|
L:ARG53
|
4.2
|
61.3
|
1.0
|
CB
|
L:LYS52
|
4.3
|
57.7
|
1.0
|
C
|
L:ARG53
|
4.5
|
66.1
|
1.0
|
O
|
L:PHE51
|
4.5
|
57.6
|
1.0
|
OP1
|
0:A693
|
4.6
|
57.8
|
1.0
|
C4'
|
0:A693
|
4.6
|
58.2
|
1.0
|
O3'
|
0:A693
|
4.7
|
59.7
|
1.0
|
CG
|
L:GLN58
|
4.8
|
95.0
|
1.0
|
CD
|
L:ARG53
|
4.8
|
59.1
|
1.0
|
CG
|
L:LYS52
|
4.9
|
57.6
|
1.0
|
N
|
L:LYS52
|
4.9
|
57.5
|
1.0
|
O5'
|
0:A693
|
5.0
|
57.5
|
1.0
|
OE1
|
L:GLN58
|
5.0
|
96.2
|
1.0
|
|
Chlorine binding site 7 out
of 22 in 3cd6
Go back to
Chlorine Binding Sites List in 3cd6
Chlorine binding site 7 out
of 22 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_07.jpg) Mono view
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_07_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Cl8818
b:40.5
occ:1.00
|
O
|
M:HOH8924
|
3.0
|
51.8
|
1.0
|
OG
|
M:SER106
|
3.0
|
38.2
|
1.0
|
N
|
M:VAL114
|
3.4
|
33.7
|
1.0
|
CG1
|
M:VAL159
|
3.4
|
38.8
|
1.0
|
N
|
M:VAL159
|
3.6
|
39.2
|
1.0
|
N
|
M:ARG158
|
3.7
|
43.2
|
1.0
|
CA
|
M:ASP157
|
3.8
|
46.5
|
1.0
|
CA
|
M:ARG113
|
3.8
|
34.6
|
1.0
|
C
|
M:ASP157
|
3.8
|
45.1
|
1.0
|
CB
|
M:VAL159
|
3.8
|
39.0
|
1.0
|
CG
|
M:ARG158
|
4.0
|
40.2
|
1.0
|
CB
|
M:SER106
|
4.1
|
39.4
|
1.0
|
C
|
M:ARG113
|
4.1
|
34.6
|
1.0
|
CG2
|
M:VAL114
|
4.1
|
29.9
|
1.0
|
CB
|
M:VAL114
|
4.2
|
30.6
|
1.0
|
N
|
M:ASP157
|
4.3
|
45.8
|
1.0
|
CA
|
M:VAL159
|
4.3
|
38.7
|
1.0
|
CB
|
M:ARG113
|
4.3
|
33.2
|
1.0
|
O
|
M:LEU112
|
4.3
|
38.6
|
1.0
|
NA
|
M:NA8539
|
4.4
|
38.1
|
1.0
|
CA
|
M:VAL114
|
4.4
|
32.3
|
1.0
|
CA
|
M:ARG158
|
4.5
|
41.5
|
1.0
|
C
|
M:ARG158
|
4.5
|
41.8
|
1.0
|
O
|
M:ASP157
|
4.5
|
45.4
|
1.0
|
CG
|
M:ARG113
|
4.5
|
32.4
|
1.0
|
CE1
|
M:PHE160
|
4.7
|
33.9
|
1.0
|
OD1
|
M:ASP157
|
4.8
|
52.7
|
1.0
|
CB
|
M:ARG158
|
4.8
|
40.7
|
1.0
|
CD1
|
M:PHE160
|
4.8
|
36.9
|
1.0
|
N
|
M:ARG113
|
4.9
|
36.9
|
1.0
|
CD
|
M:ARG158
|
4.9
|
39.5
|
1.0
|
|
Chlorine binding site 8 out
of 22 in 3cd6
Go back to
Chlorine Binding Sites List in 3cd6
Chlorine binding site 8 out
of 22 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_08.jpg) Mono view
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_08_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Cl8807
b:71.9
occ:1.00
|
N
|
N:LYS38
|
3.1
|
83.0
|
1.0
|
O
|
N:HOH8815
|
3.3
|
88.4
|
1.0
|
CD
|
D:LYS146
|
3.4
|
94.4
|
1.0
|
OD1
|
N:ASN107
|
3.5
|
71.1
|
1.0
|
CD
|
N:ARG37
|
3.5
|
77.0
|
1.0
|
O
|
N:LYS38
|
3.6
|
89.2
|
1.0
|
CA
|
N:ARG37
|
3.8
|
79.1
|
1.0
|
CB
|
N:ARG37
|
3.8
|
78.1
|
1.0
|
ND2
|
N:ASN107
|
3.9
|
71.1
|
1.0
|
C
|
N:ARG37
|
4.0
|
81.1
|
1.0
|
CA
|
N:LYS38
|
4.0
|
85.6
|
1.0
|
CG
|
N:ASN107
|
4.1
|
72.0
|
1.0
|
NZ
|
D:LYS146
|
4.2
|
95.6
|
1.0
|
C
|
N:LYS38
|
4.2
|
88.0
|
1.0
|
CG
|
N:ARG37
|
4.2
|
77.8
|
1.0
|
CB
|
N:LYS38
|
4.3
|
85.8
|
1.0
|
CE
|
D:LYS146
|
4.4
|
95.3
|
1.0
|
CG
|
D:LYS146
|
4.5
|
93.3
|
1.0
|
NE
|
N:ARG37
|
4.7
|
76.4
|
1.0
|
|
Chlorine binding site 9 out
of 22 in 3cd6
Go back to
Chlorine Binding Sites List in 3cd6
Chlorine binding site 9 out
of 22 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_09.jpg) Mono view
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_09_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Cl8808
b:62.4
occ:1.00
|
O
|
0:HOH7090
|
2.9
|
56.7
|
1.0
|
N
|
O:ASN44
|
3.3
|
53.1
|
1.0
|
ND2
|
O:ASN44
|
3.3
|
56.8
|
1.0
|
O
|
0:HOH6873
|
3.4
|
70.3
|
1.0
|
CB
|
O:ASN44
|
3.6
|
54.8
|
1.0
|
NE
|
O:ARG47
|
3.7
|
68.5
|
1.0
|
O
|
O:HOH6754
|
3.8
|
77.2
|
1.0
|
O
|
O:GLU42
|
3.9
|
58.2
|
1.0
|
CG
|
O:ASN44
|
3.9
|
56.7
|
1.0
|
C8
|
0:G745
|
4.0
|
60.7
|
1.0
|
NH2
|
O:ARG47
|
4.0
|
70.0
|
1.0
|
CA
|
O:ASN44
|
4.0
|
53.3
|
1.0
|
CA
|
O:VAL43
|
4.1
|
55.4
|
1.0
|
C
|
O:VAL43
|
4.2
|
54.3
|
1.0
|
N7
|
0:G745
|
4.3
|
61.3
|
1.0
|
CZ
|
O:ARG47
|
4.3
|
69.1
|
1.0
|
OP2
|
0:A746
|
4.6
|
51.5
|
1.0
|
CD
|
O:ARG47
|
4.6
|
65.1
|
1.0
|
CB
|
O:ARG47
|
4.6
|
61.6
|
1.0
|
O
|
O:ASN44
|
4.7
|
53.3
|
1.0
|
O
|
0:HOH9423
|
4.7
|
69.8
|
1.0
|
C
|
O:GLU42
|
4.8
|
56.9
|
1.0
|
C
|
O:ASN44
|
4.8
|
53.4
|
1.0
|
CG1
|
O:VAL43
|
4.8
|
58.3
|
1.0
|
C3'
|
0:G745
|
4.9
|
55.8
|
1.0
|
N
|
O:VAL43
|
4.9
|
56.0
|
1.0
|
OP2
|
0:G745
|
4.9
|
56.4
|
1.0
|
|
Chlorine binding site 10 out
of 22 in 3cd6
Go back to
Chlorine Binding Sites List in 3cd6
Chlorine binding site 10 out
of 22 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_10.jpg) Mono view
![](/pictures/CL/pdb/cd/3cd6-CL-sphere_10_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Cl8806
b:47.6
occ:1.00
|
O
|
R:HOH8914
|
3.0
|
27.2
|
1.0
|
NZ
|
R:LYS118
|
3.6
|
47.3
|
1.0
|
CE
|
R:LYS26
|
3.9
|
25.4
|
1.0
|
CG
|
R:LYS26
|
4.0
|
26.8
|
1.0
|
CB
|
R:PHE25
|
4.0
|
34.2
|
1.0
|
CE
|
R:LYS118
|
4.0
|
45.8
|
1.0
|
CD2
|
R:PHE25
|
4.0
|
36.7
|
1.0
|
CD
|
R:LYS118
|
4.2
|
44.7
|
1.0
|
CD
|
R:LYS26
|
4.4
|
26.0
|
1.0
|
CG
|
R:PHE25
|
4.5
|
34.7
|
1.0
|
N
|
R:LYS26
|
4.7
|
32.4
|
1.0
|
CG
|
R:PRO139
|
4.7
|
42.6
|
1.0
|
CA
|
R:PHE25
|
5.0
|
33.3
|
1.0
|
N
|
R:PHE25
|
5.0
|
34.5
|
1.0
|
CB
|
R:PRO139
|
5.0
|
42.6
|
1.0
|
|
Reference:
G.Blaha,
G.Gurel,
S.J.Schroeder,
P.B.Moore,
T.A.Steitz.
Mutations Outside the Anisomycin-Binding Site Can Make Ribosomes Drug-Resistant. J.Mol.Biol. V. 379 505 2008.
ISSN: ISSN 0022-2836
PubMed: 18455733
DOI: 10.1016/J.JMB.2008.03.075
Page generated: Sat Jul 20 17:20:03 2024
|