Chlorine in PDB 3ceh: Human Liver Glycogen Phosphorylase (Tense State) in Complex with the Allosteric Inhibitor AVE5688

All present enzymatic activity of Human Liver Glycogen Phosphorylase (Tense State) in Complex with the Allosteric Inhibitor AVE5688:
2.4.1.1;

The structure of Human Liver Glycogen Phosphorylase (Tense State) in Complex with the Allosteric Inhibitor AVE5688, PDB code: 3ceh was solved by K.U.Wendt, M.K.Dreyer, O.Anderka, T.Klabunde, P.Loenze, E.Defossa, D.Schmoll, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.60 / 2.80
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	124.115, 124.115, 122.491, 90.00, 90.00, 120.00
R / Rfree (%)	16.5 / 24.7

The structure of Human Liver Glycogen Phosphorylase (Tense State) in Complex with the Allosteric Inhibitor AVE5688 also contains other interesting chemical elements:

Fluorine

(F)

10 atoms

The binding sites of Chlorine atom in the Human Liver Glycogen Phosphorylase (Tense State) in Complex with the Allosteric Inhibitor AVE5688 (pdb code 3ceh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Human Liver Glycogen Phosphorylase (Tense State) in Complex with the Allosteric Inhibitor AVE5688, PDB code: 3ceh:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Human Liver Glycogen Phosphorylase (Tense State) in Complex with the Allosteric Inhibitor AVE5688


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human Liver Glycogen Phosphorylase (Tense State) in Complex with the Allosteric Inhibitor AVE5688 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl833 b:25.8 occ:1.00 CL10 A:AVE833 0.0 25.8 1.0 C5 A:AVE833 1.7 25.7 1.0 C6 A:AVE833 2.6 26.0 1.0 C4 A:AVE833 2.7 26.4 1.0 O28 A:AVE833 3.1 21.4 1.0 C9 A:AVE833 3.1 26.1 1.0 CD1 A:TRP67 3.4 26.8 1.0 CG A:GLN71 3.4 27.7 1.0 CG A:TRP67 3.5 26.9 1.0 O A:TRP67 3.5 28.7 1.0 NE1 A:TRP67 3.5 27.0 1.0 CD2 A:TRP67 3.7 27.2 1.0 CE2 A:TRP67 3.7 26.2 1.0 O A:HOH1011 3.7 9.5 1.0 O A:HOH922 3.7 21.6 1.0 C A:TRP67 3.8 28.9 1.0 CB A:GLN71 3.9 28.2 1.0 C1 A:AVE833 3.9 26.9 1.0 C3 A:AVE833 4.0 24.7 1.0 N A:ILE68 4.2 29.5 1.0 N12 A:AVE833 4.2 25.4 1.0 CB A:TRP67 4.2 27.6 1.0 CA A:ILE68 4.3 29.5 1.0 C2 A:AVE833 4.4 25.9 1.0 CG1 B:VAL40 4.5 23.6 1.0 CE3 A:TRP67 4.5 26.8 1.0 CZ2 A:TRP67 4.5 25.3 1.0 CA A:TRP67 4.6 28.3 1.0 CD A:GLN71 4.6 27.0 1.0 OG1 A:THR240 4.7 24.1 1.0 CG1 A:ILE68 4.8 28.6 1.0 F11 A:AVE833 5.0 28.0 1.0

Chlorine binding site 2 out of 2 in the Human Liver Glycogen Phosphorylase (Tense State) in Complex with the Allosteric Inhibitor AVE5688


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human Liver Glycogen Phosphorylase (Tense State) in Complex with the Allosteric Inhibitor AVE5688 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl833 b:30.0 occ:1.00 CL10 B:AVE833 0.0 30.0 1.0 C5 B:AVE833 1.7 30.5 1.0 C6 B:AVE833 2.7 28.0 1.0 C4 B:AVE833 2.7 30.9 1.0 C9 B:AVE833 3.2 30.4 1.0 O28 B:AVE833 3.3 29.9 1.0 CD1 B:TRP67 3.4 22.9 1.0 O B:HOH845 3.4 14.7 1.0 O B:TRP67 3.5 26.5 1.0 CG B:GLN71 3.5 32.6 1.0 NE1 B:TRP67 3.5 22.3 1.0 CG B:TRP67 3.6 23.1 1.0 O B:HOH1059 3.7 29.2 1.0 C B:TRP67 3.8 26.1 1.0 CE2 B:TRP67 3.8 21.6 1.0 CD2 B:TRP67 3.8 23.0 1.0 C1 B:AVE833 4.0 29.1 1.0 C3 B:AVE833 4.0 31.1 1.0 CB B:GLN71 4.0 32.0 1.0 N B:ILE68 4.1 25.7 1.0 N12 B:AVE833 4.1 31.1 1.0 CA B:ILE68 4.2 25.7 1.0 CB B:TRP67 4.3 24.4 1.0 C2 B:AVE833 4.5 30.3 1.0 CG1 A:VAL40 4.6 25.6 1.0 CZ2 B:TRP67 4.6 22.1 1.0 CA B:TRP67 4.6 25.9 1.0 CE3 B:TRP67 4.6 22.1 1.0 CG1 B:ILE68 4.7 25.2 1.0 CD B:GLN71 4.8 33.0 1.0 OG1 B:THR240 4.8 16.4 1.0

O.Anderka, P.Loenze, T.Klabunde, M.K.Dreyer, E.Defossa, K.U.Wendt, D.Schmoll. Thermodynamic Characterization of Allosteric Glycogen Phosphorylase Inhibitors. Biochemistry V. 47 4683 2008.
ISSN: ISSN 0006-2960
PubMed: 18373353
DOI: 10.1021/BI702397D