Chlorine in PDB 3cqy: Crystal Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1
Protein crystallography data
The structure of Crystal Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1, PDB code: 3cqy
was solved by
K.Tan,
E.Evdokimova,
M.Kudritska,
A.Savchenko,
A.M.Edwards,
A.Joachimiak,
Midwest Center For Structural Genomics (Mcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.78 /
2.30
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
147.816,
147.816,
117.687,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.3 /
21.1
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1
(pdb code 3cqy). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Crystal Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1, PDB code: 3cqy:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 3cqy
Go back to
Chlorine Binding Sites List in 3cqy
Chlorine binding site 1 out
of 6 in the Crystal Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl370
b:52.9
occ:1.00
|
N
|
A:LEU147
|
3.1
|
40.4
|
1.0
|
O
|
A:HOH481
|
3.6
|
58.0
|
1.0
|
CA
|
A:PRO146
|
3.6
|
40.7
|
1.0
|
O
|
A:HOH540
|
3.6
|
40.3
|
1.0
|
N
|
A:VAL148
|
3.7
|
39.8
|
1.0
|
CB
|
A:PRO146
|
3.8
|
40.2
|
1.0
|
NH1
|
A:ARG134
|
3.8
|
37.6
|
1.0
|
C
|
A:PRO146
|
3.8
|
40.7
|
1.0
|
NH2
|
A:ARG134
|
3.9
|
38.6
|
1.0
|
CA
|
A:LEU147
|
4.1
|
40.3
|
1.0
|
CG1
|
A:VAL148
|
4.1
|
37.7
|
1.0
|
CB
|
A:LEU147
|
4.3
|
40.9
|
1.0
|
CZ
|
A:ARG134
|
4.3
|
38.4
|
1.0
|
C
|
A:LEU147
|
4.4
|
40.4
|
1.0
|
CG2
|
A:VAL148
|
4.4
|
36.5
|
1.0
|
CB
|
A:VAL148
|
4.6
|
38.6
|
1.0
|
OE2
|
A:GLU331
|
4.7
|
55.5
|
1.0
|
CA
|
A:VAL148
|
4.8
|
38.7
|
1.0
|
ND2
|
A:ASN173
|
4.8
|
38.2
|
1.0
|
CG
|
A:LEU147
|
4.8
|
40.9
|
1.0
|
N
|
A:PRO146
|
4.9
|
41.0
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 3cqy
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Chlorine Binding Sites List in 3cqy
Chlorine binding site 2 out
of 6 in the Crystal Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl371
b:65.6
occ:1.00
|
NH1
|
A:ARG64
|
3.1
|
53.7
|
1.0
|
NH1
|
A:ARG50
|
3.3
|
59.5
|
1.0
|
CA
|
A:GLY47
|
3.4
|
41.5
|
1.0
|
NH1
|
A:ARG61
|
3.5
|
39.2
|
1.0
|
CD
|
A:ARG61
|
3.9
|
35.5
|
1.0
|
O
|
A:HOH407
|
4.0
|
41.0
|
1.0
|
NH2
|
A:ARG64
|
4.0
|
57.3
|
1.0
|
CZ
|
A:ARG64
|
4.0
|
52.6
|
1.0
|
CG
|
A:ARG61
|
4.1
|
36.0
|
1.0
|
CD2
|
A:LEU65
|
4.1
|
34.7
|
1.0
|
CZ
|
A:ARG50
|
4.3
|
61.6
|
1.0
|
N
|
A:GLY47
|
4.4
|
42.3
|
1.0
|
CD
|
A:ARG50
|
4.4
|
54.9
|
1.0
|
CD1
|
A:LEU65
|
4.5
|
31.9
|
1.0
|
C
|
A:GLY47
|
4.5
|
41.6
|
1.0
|
CZ
|
A:ARG61
|
4.6
|
36.9
|
1.0
|
O
|
A:GLY47
|
4.7
|
41.1
|
1.0
|
CG
|
A:LEU65
|
4.7
|
34.2
|
1.0
|
NE
|
A:ARG61
|
4.7
|
35.5
|
1.0
|
NE
|
A:ARG50
|
4.8
|
60.1
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 3cqy
Go back to
Chlorine Binding Sites List in 3cqy
Chlorine binding site 3 out
of 6 in the Crystal Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl372
b:64.9
occ:1.00
|
NH2
|
A:ARG67
|
3.3
|
34.6
|
1.0
|
NZ
|
A:LYS71
|
3.5
|
37.9
|
1.0
|
O
|
A:HOH403
|
3.8
|
27.8
|
1.0
|
O
|
B:ALA139
|
3.9
|
37.4
|
1.0
|
O
|
A:HOH478
|
4.0
|
42.5
|
1.0
|
O
|
B:HOH458
|
4.0
|
46.5
|
1.0
|
CE
|
A:LYS71
|
4.3
|
38.1
|
1.0
|
CZ
|
A:ARG67
|
4.3
|
36.7
|
1.0
|
O
|
B:ILE138
|
4.4
|
37.0
|
1.0
|
N
|
B:GLY141
|
4.5
|
36.0
|
1.0
|
NH1
|
A:ARG67
|
4.5
|
35.8
|
1.0
|
C
|
B:ALA139
|
4.5
|
36.6
|
1.0
|
CA
|
B:GLY141
|
4.6
|
35.5
|
1.0
|
OE2
|
A:GLU124
|
4.6
|
46.6
|
1.0
|
O
|
B:VAL109
|
4.9
|
47.6
|
1.0
|
O
|
A:HOH596
|
5.0
|
51.3
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 3cqy
Go back to
Chlorine Binding Sites List in 3cqy
Chlorine binding site 4 out
of 6 in the Crystal Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl370
b:55.9
occ:1.00
|
N
|
B:LEU147
|
3.1
|
39.9
|
1.0
|
CA
|
B:PRO146
|
3.6
|
40.0
|
1.0
|
NH1
|
B:ARG134
|
3.7
|
40.6
|
1.0
|
O
|
A:HOH546
|
3.7
|
45.1
|
1.0
|
NH2
|
B:ARG134
|
3.8
|
36.9
|
1.0
|
O
|
B:HOH440
|
3.8
|
43.3
|
1.0
|
CB
|
B:PRO146
|
3.9
|
39.9
|
1.0
|
N
|
B:VAL148
|
3.9
|
39.6
|
1.0
|
C
|
B:PRO146
|
3.9
|
40.4
|
1.0
|
CA
|
B:LEU147
|
4.1
|
39.7
|
1.0
|
CB
|
B:LEU147
|
4.1
|
39.2
|
1.0
|
CZ
|
B:ARG134
|
4.2
|
37.2
|
1.0
|
CG1
|
B:VAL148
|
4.3
|
39.2
|
1.0
|
C
|
B:LEU147
|
4.4
|
40.0
|
1.0
|
CG2
|
B:VAL148
|
4.5
|
38.1
|
1.0
|
CG
|
B:LEU147
|
4.7
|
39.4
|
1.0
|
CB
|
B:VAL148
|
4.8
|
39.5
|
1.0
|
CB
|
B:ALA145
|
4.9
|
38.7
|
1.0
|
CA
|
B:VAL148
|
4.9
|
39.3
|
1.0
|
CZ
|
B:PHE335
|
4.9
|
38.5
|
1.0
|
N
|
B:PRO146
|
5.0
|
40.3
|
1.0
|
CE2
|
B:PHE335
|
5.0
|
40.8
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 3cqy
Go back to
Chlorine Binding Sites List in 3cqy
Chlorine binding site 5 out
of 6 in the Crystal Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl371
b:67.1
occ:1.00
|
NH1
|
B:ARG50
|
3.1
|
60.0
|
1.0
|
NH2
|
B:ARG64
|
3.1
|
48.5
|
1.0
|
NE
|
B:ARG61
|
3.2
|
42.6
|
1.0
|
CA
|
B:GLY47
|
3.6
|
41.5
|
1.0
|
NH1
|
B:ARG61
|
4.0
|
44.5
|
1.0
|
CZ
|
B:ARG64
|
4.0
|
46.1
|
1.0
|
CD
|
B:ARG61
|
4.0
|
41.0
|
1.0
|
NE
|
B:ARG64
|
4.1
|
42.8
|
1.0
|
CZ
|
B:ARG61
|
4.1
|
42.6
|
1.0
|
CG
|
B:ARG61
|
4.1
|
38.1
|
1.0
|
CZ
|
B:ARG50
|
4.2
|
61.6
|
1.0
|
CD2
|
B:LEU65
|
4.3
|
34.2
|
1.0
|
CD
|
B:ARG50
|
4.4
|
57.6
|
1.0
|
O
|
B:HOH390
|
4.5
|
43.9
|
1.0
|
CD1
|
B:LEU65
|
4.5
|
33.4
|
1.0
|
N
|
B:GLY47
|
4.5
|
41.8
|
1.0
|
C
|
B:GLY47
|
4.6
|
41.9
|
1.0
|
CG
|
B:LEU65
|
4.7
|
33.4
|
1.0
|
NE
|
B:ARG50
|
4.7
|
60.6
|
1.0
|
O
|
B:GLY47
|
4.8
|
41.5
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 3cqy
Go back to
Chlorine Binding Sites List in 3cqy
Chlorine binding site 6 out
of 6 in the Crystal Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl372
b:72.7
occ:1.00
|
NH2
|
B:ARG67
|
3.2
|
35.5
|
1.0
|
NZ
|
B:LYS71
|
3.4
|
39.3
|
1.0
|
O
|
B:HOH515
|
3.6
|
34.3
|
1.0
|
O
|
A:ALA139
|
3.9
|
37.6
|
1.0
|
O
|
B:HOH517
|
4.0
|
49.3
|
1.0
|
CZ
|
B:ARG67
|
4.2
|
35.0
|
1.0
|
O
|
A:HOH606
|
4.2
|
51.8
|
1.0
|
NH1
|
B:ARG67
|
4.3
|
37.4
|
1.0
|
CE
|
B:LYS71
|
4.4
|
38.7
|
1.0
|
O
|
A:ILE138
|
4.4
|
38.3
|
1.0
|
O
|
A:HOH423
|
4.5
|
41.0
|
1.0
|
OE2
|
B:GLU124
|
4.6
|
45.5
|
1.0
|
C
|
A:ALA139
|
4.6
|
37.5
|
1.0
|
N
|
A:GLY141
|
4.7
|
36.4
|
1.0
|
CA
|
A:GLY141
|
4.8
|
35.9
|
1.0
|
|
Reference:
K.Tan,
E.Evdokimova,
M.Kudritska,
A.Savchenko,
A.M.Edwards,
A.Joachimiak.
The Structure of A Functionally Unknown Protein (SO_1313) From Shewanella Oneidensis Mr-1. To Be Published.
Page generated: Sat Jul 20 17:46:25 2024
|