Chlorine in PDB 3d0i: Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2

Enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2

All present enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2:
3.4.17.23;

Protein crystallography data

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2, PDB code: 3d0i was solved by F.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	36.47 / 2.90
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	80.424, 119.824, 109.772, 90.00, 95.50, 90.00
*R / R_free (%)*	22.4 / 27.8

Other elements in 3d0i:

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2 also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2 (pdb code 3d0i). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2, PDB code: 3d0i:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3d0i

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Chlorine Binding Sites List in 3d0i

Chlorine binding site 1 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl902 b:85.0 occ:1.00	NE1	A:TRP477	3.2	65.3	1.0
	NE	A:ARG169	3.3	77.4	1.0
	NH1	A:ARG169	3.4	76.3	1.0
	CB	A:ASP499	3.6	79.9	1.0
	CZ	A:ARG169	3.8	76.8	1.0
	CZ2	A:TRP477	3.9	66.1	1.0
	CE2	A:TRP477	3.9	65.8	1.0
	CZ2	A:TRP478	4.1	76.9	1.0
	NZ	A:LYS481	4.1	75.2	1.0
	CH2	A:TRP478	4.2	76.2	1.0
	CE	A:LYS481	4.2	74.0	1.0
	CD1	A:TRP477	4.4	66.2	1.0
	O	A:ASP499	4.4	75.6	1.0
	C	A:ASP499	4.4	76.2	1.0
	CD	A:ARG169	4.4	78.5	1.0
	CG	A:ASP499	4.5	79.5	1.0
	CA	A:ASP499	4.6	79.4	1.0
	CZ2	A:TRP165	4.6	56.3	1.0
	OD1	A:ASP499	4.7	79.4	1.0
	CD1	A:TRP271	4.8	64.5	1.0
	N	A:PRO500	4.9	73.6	1.0

Chlorine binding site 2 out of 2 in 3d0i

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Chlorine Binding Sites List in 3d0i

Chlorine binding site 2 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Cl902 b:73.1 occ:1.00	NE	B:ARG169	2.8	74.4	1.0
	CB	B:ASP499	3.4	61.5	1.0
	NH1	B:ARG169	3.5	72.6	1.0
	CZ	B:ARG169	3.6	72.8	1.0
	CD	B:ARG169	3.8	75.4	1.0
	CZ2	B:TRP478	3.8	70.3	1.0
	NE1	B:TRP477	3.8	65.1	1.0
	CG	B:ASP499	4.0	61.3	1.0
	CH2	B:TRP478	4.1	70.2	1.0
	CZ2	B:TRP477	4.1	64.0	1.0
	OD1	B:ASP499	4.2	60.6	1.0
	O	B:ASP499	4.2	61.2	1.0
	C	B:ASP499	4.2	61.5	1.0
	CA	B:ASP499	4.3	62.0	1.0
	CE2	B:TRP477	4.3	64.6	1.0
	NZ	B:LYS481	4.3	69.3	1.0
	CZ2	B:TRP165	4.4	54.6	1.0
	CE	B:LYS481	4.6	69.3	1.0
	CE2	B:TRP478	4.7	70.8	1.0
	N	B:PRO500	4.8	60.9	1.0
	OD2	B:ASP499	4.8	61.2	1.0
	CG	B:ARG169	4.8	74.6	1.0
	NH2	B:ARG169	4.9	71.6	1.0
	CE2	B:TRP165	4.9	54.2	1.0
	NE1	B:TRP165	4.9	54.6	1.0

Reference:

F.Li, F.Li. N/A N/A.
ISSN: ISSN 0022-538X
PubMed: 18448527
DOI: 10.1128/JVI.00442-08

Page generated: Sat Jul 20 17:57:14 2024

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