Chlorine in PDB 3d0i: Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2

Enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2

All present enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2:
3.4.17.23;

Protein crystallography data

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2, PDB code: 3d0i was solved by F.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	36.47 / 2.90
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	80.424, 119.824, 109.772, 90.00, 95.50, 90.00
*R / R_free (%)*	22.4 / 27.8

Other elements in 3d0i:

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2 also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2 (pdb code 3d0i). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2, PDB code: 3d0i:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3d0i

Go back to

Chlorine Binding Sites List in 3d0i

Chlorine binding site 1 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl902 b:85.0 occ:1.00	NE1	A:TRP477	3.2	65.3	1.0
	NE	A:ARG169	3.3	77.4	1.0
	NH1	A:ARG169	3.4	76.3	1.0
	CB	A:ASP499	3.6	79.9	1.0
	CZ	A:ARG169	3.8	76.8	1.0
	CZ2	A:TRP477	3.9	66.1	1.0
	CE2	A:TRP477	3.9	65.8	1.0
	CZ2	A:TRP478	4.1	76.9	1.0
	NZ	A:LYS481	4.1	75.2	1.0
	CH2	A:TRP478	4.2	76.2	1.0
	CE	A:LYS481	4.2	74.0	1.0
	CD1	A:TRP477	4.4	66.2	1.0
	O	A:ASP499	4.4	75.6	1.0
	C	A:ASP499	4.4	76.2	1.0
	CD	A:ARG169	4.4	78.5	1.0
	CG	A:ASP499	4.5	79.5	1.0
	CA	A:ASP499	4.6	79.4	1.0
	CZ2	A:TRP165	4.6	56.3	1.0
	OD1	A:ASP499	4.7	79.4	1.0
	CD1	A:TRP271	4.8	64.5	1.0
	N	A:PRO500	4.9	73.6	1.0

Chlorine binding site 2 out of 2 in 3d0i

Go back to

Chlorine Binding Sites List in 3d0i

Chlorine binding site 2 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Cl902 b:73.1 occ:1.00	NE	B:ARG169	2.8	74.4	1.0
	CB	B:ASP499	3.4	61.5	1.0
	NH1	B:ARG169	3.5	72.6	1.0
	CZ	B:ARG169	3.6	72.8	1.0
	CD	B:ARG169	3.8	75.4	1.0
	CZ2	B:TRP478	3.8	70.3	1.0
	NE1	B:TRP477	3.8	65.1	1.0
	CG	B:ASP499	4.0	61.3	1.0
	CH2	B:TRP478	4.1	70.2	1.0
	CZ2	B:TRP477	4.1	64.0	1.0
	OD1	B:ASP499	4.2	60.6	1.0
	O	B:ASP499	4.2	61.2	1.0
	C	B:ASP499	4.2	61.5	1.0
	CA	B:ASP499	4.3	62.0	1.0
	CE2	B:TRP477	4.3	64.6	1.0
	NZ	B:LYS481	4.3	69.3	1.0
	CZ2	B:TRP165	4.4	54.6	1.0
	CE	B:LYS481	4.6	69.3	1.0
	CE2	B:TRP478	4.7	70.8	1.0
	N	B:PRO500	4.8	60.9	1.0
	OD2	B:ASP499	4.8	61.2	1.0
	CG	B:ARG169	4.8	74.6	1.0
	NH2	B:ARG169	4.9	71.6	1.0
	CE2	B:TRP165	4.9	54.2	1.0
	NE1	B:TRP165	4.9	54.6	1.0

Reference:

F.Li, F.Li. N/A N/A.
ISSN: ISSN 0022-538X
PubMed: 18448527
DOI: 10.1128/JVI.00442-08

Page generated: Sat Dec 12 09:37:33 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy