Chlorine in PDB 3d1r: Structure of E. Coli Glpx with Its Substrate Fructose 1,6-Bisphosphate

Enzymatic activity of Structure of E. Coli Glpx with Its Substrate Fructose 1,6-Bisphosphate

All present enzymatic activity of Structure of E. Coli Glpx with Its Substrate Fructose 1,6-Bisphosphate:
3.1.3.11;

Protein crystallography data

The structure of Structure of E. Coli Glpx with Its Substrate Fructose 1,6-Bisphosphate, PDB code: 3d1r was solved by A.Singer, T.Skarina, A.Dong, G.Brown, A.Joachimiak, A.M.Edwards, A.F.Yakunin, A.Savchenko, Midwest Center For Structural Genomics(Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	28.65 / 1.85
*Space group*	P 4 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	91.296, 91.296, 84.913, 90.00, 90.00, 90.00
*R / R_free (%)*	17.5 / 21.6

Other elements in 3d1r:

The structure of Structure of E. Coli Glpx with Its Substrate Fructose 1,6-Bisphosphate also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Calcium	(Ca)	2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of E. Coli Glpx with Its Substrate Fructose 1,6-Bisphosphate (pdb code 3d1r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of E. Coli Glpx with Its Substrate Fructose 1,6-Bisphosphate, PDB code: 3d1r:

Chlorine binding site 1 out of 1 in 3d1r

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Chlorine Binding Sites List in 3d1r

Chlorine binding site 1 out of 1 in the Structure of E. Coli Glpx with Its Substrate Fructose 1,6-Bisphosphate

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of E. Coli Glpx with Its Substrate Fructose 1,6-Bisphosphate within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl3503 b:29.1 occ:1.00	N	A:ARG166	3.3	22.4	1.0
	NH1	A:ARG166	3.3	24.1	1.0
	CG	A:ARG166	3.5	19.4	1.0
	CB	A:ARG166	3.5	20.9	1.0
	CD	A:PRO165	3.6	22.1	1.0
	CE	A:LYS239	3.7	40.6	1.0
	N	A:PRO165	3.9	22.4	1.0
	CD	A:ARG166	3.9	19.9	1.0
	NZ	A:LYS239	3.9	42.5	1.0
	CB	A:LYS164	3.9	20.2	1.0
	CD	A:LYS239	4.0	40.8	1.0
	CA	A:ARG166	4.0	21.1	1.0
	CB	A:PRO165	4.1	23.6	1.0
	O	A:HOH3795	4.2	50.7	1.0
	C	A:PRO165	4.2	22.8	1.0
	CA	A:PRO165	4.3	22.4	1.0
	CG	A:PRO165	4.3	22.7	1.0
	CZ	A:ARG166	4.3	22.3	1.0
	C	A:LYS164	4.4	21.1	1.0
	NE	A:ARG166	4.5	20.9	1.0
	CA	A:LYS164	4.7	20.6	1.0
	CG	A:LYS164	5.0	20.2	1.0

Reference:

G.Brown, A.Singer, V.V.Lunin, M.Proudfoot, T.Skarina, R.Flick, S.Kochinyan, R.Sanishvili, A.Joachimiak, A.M.Edwards, A.Savchenko, A.F.Yakunin. Structural and Biochemical Characterization of the Type II Fructose-1,6-Bisphosphatase Glpx From Escherichia Coli. J.Biol.Chem. V. 284 3784 2009.
ISSN: ISSN 0021-9258
PubMed: 19073594
DOI: 10.1074/JBC.M808186200

Page generated: Sat Jul 20 17:58:56 2024

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