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Chlorine in PDB 3d2z: Complex of the N-Acetylmuramyl-L-Alanine Amidase Amid From E.Coli with the Product L-Ala-D-Gamma-Glu-L-Lys

Enzymatic activity of Complex of the N-Acetylmuramyl-L-Alanine Amidase Amid From E.Coli with the Product L-Ala-D-Gamma-Glu-L-Lys

All present enzymatic activity of Complex of the N-Acetylmuramyl-L-Alanine Amidase Amid From E.Coli with the Product L-Ala-D-Gamma-Glu-L-Lys:
3.5.1.28;

Protein crystallography data

The structure of Complex of the N-Acetylmuramyl-L-Alanine Amidase Amid From E.Coli with the Product L-Ala-D-Gamma-Glu-L-Lys, PDB code: 3d2z was solved by F.Kerff, S.Petrella, R.Herman, E.Sauvage, F.Mercier, A.Luxen, J.M.Frere, B.Joris, P.Charlier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.90 / 2.80
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 89.160, 89.160, 183.640, 90.00, 90.00, 120.00
R / Rfree (%) 20.2 / 26.5

Other elements in 3d2z:

The structure of Complex of the N-Acetylmuramyl-L-Alanine Amidase Amid From E.Coli with the Product L-Ala-D-Gamma-Glu-L-Lys also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Complex of the N-Acetylmuramyl-L-Alanine Amidase Amid From E.Coli with the Product L-Ala-D-Gamma-Glu-L-Lys (pdb code 3d2z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Complex of the N-Acetylmuramyl-L-Alanine Amidase Amid From E.Coli with the Product L-Ala-D-Gamma-Glu-L-Lys, PDB code: 3d2z:

Chlorine binding site 1 out of 1 in 3d2z

Go back to Chlorine Binding Sites List in 3d2z
Chlorine binding site 1 out of 1 in the Complex of the N-Acetylmuramyl-L-Alanine Amidase Amid From E.Coli with the Product L-Ala-D-Gamma-Glu-L-Lys


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Complex of the N-Acetylmuramyl-L-Alanine Amidase Amid From E.Coli with the Product L-Ala-D-Gamma-Glu-L-Lys within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl264

b:23.2
occ:1.00
NH1 A:ARG71 4.1 19.9 1.0
NH2 A:ARG71 4.2 19.5 1.0
CZ A:ARG71 4.7 19.4 1.0
CE2 A:TYR66 4.8 22.3 1.0

Reference:

F.Kerff, S.Petrella, F.Mercier, E.Sauvage, R.Herman, A.Pennartz, A.Zervosen, A.Luxen, J.M.Frere, B.Joris, P.Charlier. Specific Structural Features of the N-Acetylmuramoyl-L-Alanine Amidase Amid From Escherichia Coli and Mechanistic Implications For Enzymes of This Family. J.Mol.Biol. V. 397 249 2010.
ISSN: ISSN 0022-2836
PubMed: 20036252
DOI: 10.1016/J.JMB.2009.12.038
Page generated: Sat Dec 12 09:37:43 2020

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