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Chlorine in PDB 3d37: The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58

Protein crystallography data

The structure of The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58, PDB code: 3d37 was solved by R.Zhang, H.Li, M.Bargassa, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 97.13 / 2.10
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 137.460, 137.460, 137.460, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 27.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58 (pdb code 3d37). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58, PDB code: 3d37:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 3d37

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Chlorine binding site 1 out of 6 in the The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl382

b:27.4
occ:1.00
 O A:ASP30 2.7 30.2 1.0
O A:ILE33 2.7 29.8 1.0
OD1 A:ASP36 2.8 23.5 1.0
O A:HOH409 2.8 29.3 1.0
O A:HOH390 2.8 35.7 1.0
O A:PRO34 2.9 31.5 1.0
O A:HOH423 3.1 35.6 1.0
O A:HOH395 3.6 29.3 1.0
C A:PRO34 3.6 29.4 1.0
CG A:ASP36 3.7 27.0 1.0
C A:ILE33 3.8 28.9 1.0
C A:ASP30 3.9 28.5 1.0
OD2 A:ASP36 4.1 23.9 1.0
N A:ASP36 4.2 28.9 1.0
CA A:PRO34 4.2 29.4 1.0
CB A:TRP167 4.4 31.3 1.0
N A:ALA35 4.4 29.4 1.0
O A:PHE31 4.4 28.6 1.0
N A:PRO34 4.5 28.6 1.0
C A:PHE31 4.6 28.8 1.0
N A:ASP30 4.6 27.4 1.0
OD2 A:ASP93 4.6 31.8 1.0
CA A:PHE31 4.6 29.1 1.0
C A:ALA35 4.7 29.3 1.0
N A:PHE31 4.7 28.4 1.0
O A:HOH427 4.7 39.7 1.0
CA A:ASP30 4.8 28.4 1.0
CA A:ALA35 4.8 29.3 1.0
CB A:ASP36 4.8 26.5 1.0
CA A:TRP167 4.9 31.7 1.0
CA A:ASP36 4.9 28.0 1.0
N A:LEU168 5.0 31.9 1.0
CA A:ILE33 5.0 29.3 1.0
N A:ILE33 5.0 29.6 1.0

Chlorine binding site 2 out of 6 in 3d37

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Chlorine binding site 2 out of 6 in the The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl383

b:37.4
occ:1.00
 O A:HOH482 3.5 47.1 1.0
OG1 A:THR150 3.8 40.7 1.0
CB A:TRP152 3.9 34.7 1.0
CD1 A:TRP152 4.0 31.5 1.0
CG2 A:VAL99 4.1 36.1 1.0
CG A:GLN153 4.2 38.8 1.0
CG1 A:VAL99 4.2 36.5 1.0
CG A:PRO34 4.2 29.1 1.0
CG A:TRP152 4.3 32.4 1.0
N A:GLN153 4.4 36.9 1.0
CB A:VAL99 4.4 39.1 1.0
CA A:VAL99 4.5 39.4 1.0
CB A:PRO34 4.6 28.2 1.0
O A:VAL99 4.7 39.8 1.0
CB A:THR150 4.8 42.9 1.0
CD A:GLN153 4.8 39.1 1.0
CG2 A:THR150 4.8 39.7 1.0
C A:TRP152 4.9 35.9 1.0

Chlorine binding site 3 out of 6 in 3d37

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Chlorine binding site 3 out of 6 in the The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl384

b:33.4
occ:1.00
 O A:HOH432 2.6 61.8 1.0
O B:HOH597 2.9 69.9 1.0
O A:HOH504 3.4 45.7 1.0
N A:ARG290 3.4 34.3 1.0
CD2 A:LEU189 3.9 31.7 1.0
CA A:THR289 3.9 31.4 1.0
O B:HOH593 4.1 54.0 1.0
CG A:ARG290 4.1 41.5 1.0
CB A:ARG290 4.1 36.8 1.0
C A:THR289 4.1 32.0 1.0
CB A:ALA187 4.2 35.6 1.0
CB A:THR289 4.2 30.7 1.0
CA A:ARG290 4.3 36.1 1.0
CZ2 A:TRP295 4.5 26.3 1.0
O A:HOH416 4.5 36.9 1.0
CH2 A:TRP295 4.6 23.4 1.0
OD1 A:ASN199 4.7 51.7 1.0
O A:THR188 4.7 36.7 1.0
CG2 A:THR289 4.8 29.2 1.0

Chlorine binding site 4 out of 6 in 3d37

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Chlorine binding site 4 out of 6 in the The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl382

b:31.8
occ:1.00
 NH2 B:ARG20 2.6 59.3 1.0
O B:HOH609 2.7 44.8 1.0
N B:GLY65 3.7 44.5 1.0
NH2 B:ARG13 3.9 40.1 1.0
CZ B:ARG20 3.9 60.7 1.0
CA B:GLY65 4.1 45.2 1.0
OG B:SER11 4.1 40.5 1.0
O B:HOH608 4.4 45.4 1.0
NH1 B:ARG20 4.6 62.1 1.0
CG2 B:VAL62 4.6 40.4 1.0
C B:ASP64 4.7 45.4 1.0
NE B:ARG20 4.8 60.2 1.0
CA B:ASP64 4.9 45.7 1.0
CB B:SER11 4.9 46.1 1.0

Chlorine binding site 5 out of 6 in 3d37

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Chlorine binding site 5 out of 6 in the The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl383

b:22.5
occ:1.00
 O B:ASP30 2.5 30.7 1.0
O B:ILE33 2.6 29.9 1.0
O B:HOH455 2.7 24.2 1.0
OD1 B:ASP36 2.9 27.5 1.0
O B:HOH453 2.9 26.4 1.0
O B:PRO34 3.0 27.8 1.0
O B:HOH472 3.2 31.1 1.0
O B:HOH463 3.6 29.0 1.0
C B:PRO34 3.7 28.0 1.0
CG B:ASP36 3.7 29.6 1.0
C B:ASP30 3.8 29.4 1.0
C B:ILE33 3.8 30.9 1.0
OD2 B:ASP36 4.1 30.1 1.0
N B:ASP36 4.2 26.6 1.0
CA B:PRO34 4.3 29.7 1.0
CB B:TRP167 4.3 29.6 1.0
O B:PHE31 4.4 30.1 1.0
N B:ALA35 4.4 26.9 1.0
N B:ASP30 4.5 28.9 1.0
C B:PHE31 4.5 30.9 1.0
N B:PRO34 4.5 29.6 1.0
CA B:PHE31 4.6 30.3 1.0
OD2 B:ASP93 4.6 27.5 1.0
N B:PHE31 4.6 29.6 1.0
C B:ALA35 4.6 26.4 1.0
CA B:ASP30 4.7 29.5 1.0
O B:HOH483 4.7 32.5 1.0
CA B:ALA35 4.7 27.6 1.0
CA B:TRP167 4.8 27.9 1.0
O B:HOH458 4.8 32.4 1.0
N B:ILE33 4.8 31.7 1.0
CB B:ASP36 4.8 26.8 1.0
CA B:ILE33 4.9 31.3 1.0
CA B:ASP36 4.9 27.1 1.0
N B:LEU168 5.0 27.7 1.0

Chlorine binding site 6 out of 6 in 3d37

Go back to Chlorine Binding Sites List in 3d37
Chlorine binding site 6 out of 6 in the The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl384

b:25.0
occ:1.00
 O B:HOH533 3.1 40.1 1.0
O B:HOH532 3.4 36.4 1.0
OG1 B:THR150 3.9 30.6 1.0
CG B:GLN153 4.0 32.8 1.0
CB B:TRP152 4.1 26.4 1.0
CD1 B:TRP152 4.1 25.1 1.0
CG B:PRO34 4.2 29.7 1.0
CG2 B:VAL99 4.3 26.8 1.0
CG1 B:VAL99 4.3 30.6 1.0
CG B:TRP152 4.4 26.5 1.0
CB B:PRO34 4.5 29.0 1.0
N B:GLN153 4.6 27.6 1.0
CB B:VAL99 4.6 30.1 1.0
CA B:VAL99 4.6 30.5 1.0
CD B:GLN153 4.7 32.7 1.0
NE2 B:GLN153 4.7 41.9 1.0
O B:HOH549 4.7 43.4 1.0
O B:VAL99 4.8 31.5 1.0
C B:TRP152 5.0 27.4 1.0
CB B:THR150 5.0 34.5 1.0

Reference:

R.Zhang, H.Li, M.Bargassa, A.Joachimiak. The Crystal Structure of the Tail Protein From Neisseria Meningitidis MC58. To Be Published.
Page generated: Sat Jul 20 18:00:34 2024

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