Chlorine in PDB 3d52: Golgi Mannosidase II Complex with An N-Aryl Carbamate Derivative of Gluco-Hydroxyiminolactam

All present enzymatic activity of Golgi Mannosidase II Complex with An N-Aryl Carbamate Derivative of Gluco-Hydroxyiminolactam:
3.2.1.114;

The structure of Golgi Mannosidase II Complex with An N-Aryl Carbamate Derivative of Gluco-Hydroxyiminolactam, PDB code: 3d52 was solved by D.A.Kuntz, C.A.Tarling, S.G.Withers, D.R.Rose, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.72 / 1.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	68.579, 107.912, 137.062, 90.00, 90.00, 90.00
R / Rfree (%)	22.8 / 24

The structure of Golgi Mannosidase II Complex with An N-Aryl Carbamate Derivative of Gluco-Hydroxyiminolactam also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Chlorine atom in the Golgi Mannosidase II Complex with An N-Aryl Carbamate Derivative of Gluco-Hydroxyiminolactam (pdb code 3d52). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Golgi Mannosidase II Complex with An N-Aryl Carbamate Derivative of Gluco-Hydroxyiminolactam, PDB code: 3d52:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Golgi Mannosidase II Complex with An N-Aryl Carbamate Derivative of Gluco-Hydroxyiminolactam


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Golgi Mannosidase II Complex with An N-Aryl Carbamate Derivative of Gluco-Hydroxyiminolactam within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1048 b:35.1 occ:0.50 CL12 A:GHR1048 0.0 35.1 0.5 C12 A:GHR1048 1.7 33.5 0.5 C11 A:GHR1048 2.7 33.3 0.5 C13 A:GHR1048 2.7 33.9 0.5 C10 A:GHR1048 4.0 32.9 0.5 C14 A:GHR1048 4.0 34.0 0.5 O A:HOH1381 4.1 15.2 1.0 O A:HOH1760 4.2 29.0 1.0 O A:HOH1763 4.3 39.2 1.0 C9 A:GHR1048 4.5 34.5 0.5 O A:ASP341 4.8 11.1 1.0 CB A:ASP341 4.8 9.2 1.0 O A:HOH1380 4.8 20.5 1.0

Chlorine binding site 2 out of 2 in the Golgi Mannosidase II Complex with An N-Aryl Carbamate Derivative of Gluco-Hydroxyiminolactam


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Golgi Mannosidase II Complex with An N-Aryl Carbamate Derivative of Gluco-Hydroxyiminolactam within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1048 b:33.6 occ:0.50 CL12 A:GHR1048 0.0 33.6 0.5 C12 A:GHR1048 1.7 32.2 0.5 C11 A:GHR1048 2.7 32.5 0.5 C13 A:GHR1048 2.7 32.4 0.5 O A:HOH1811 3.9 40.9 1.0 C10 A:GHR1048 4.0 32.1 0.5 C14 A:GHR1048 4.0 32.2 0.5 O A:HOH1809 4.0 25.9 1.0 O A:GLU875 4.2 16.3 1.0 C9 A:GHR1048 4.5 33.3 0.5

D.A.Kuntz, C.A.Tarling, S.G.Withers, D.R.Rose. Structural Analysis of Golgi Alpha-Mannosidase II Inhibitors Identified From A Focused Glycosidase Inhibitor Screen. Biochemistry V. 47 10058 2008.
ISSN: ISSN 0006-2960
PubMed: 18759458
DOI: 10.1021/BI8010785