Atomistry » Chlorine » PDB 3d44-3dgc » 3daq
Atomistry »
  Chlorine »
    PDB 3d44-3dgc »
      3daq »

Chlorine in PDB 3daq: Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus

Enzymatic activity of Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus

All present enzymatic activity of Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus:
4.2.1.52;

Protein crystallography data

The structure of Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus, PDB code: 3daq was solved by R.C.J.Dobson, B.R.Burgess, G.B.Jameson, J.A.Gerrard, M.W.Parker, M.A.Perugini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.25 / 1.45
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 65.410, 67.573, 77.998, 90.13, 68.85, 72.29
R / Rfree (%) 13.2 / 16.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus (pdb code 3daq). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus, PDB code: 3daq:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3daq

Go back to Chlorine Binding Sites List in 3daq
Chlorine binding site 1 out of 4 in the Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl294

b:13.3
occ:1.00
 OG1 A:THR13 2.9 7.1 1.0
O A:HOH340 3.0 12.8 1.0
O A:HOH327 3.0 10.8 1.0
CB A:PRO15 3.6 6.3 1.0
N A:PRO15 3.6 6.0 1.0
ND1 A:HIS29 3.6 7.4 1.0
CB A:THR13 3.7 6.1 1.0
CB A:PHE262 3.8 10.6 1.0
CA A:PRO15 3.8 6.6 1.0
CD A:PRO15 3.9 6.5 1.0
O A:PHE262 3.9 11.1 1.0
CB A:THR257 4.0 7.1 1.0
C A:THR14 4.0 6.3 1.0
CG A:PRO15 4.0 6.6 1.0
OG1 A:THR257 4.1 7.9 1.0
O A:THR13 4.1 5.9 1.0
C A:THR13 4.1 5.8 1.0
CE1 A:HIS29 4.2 7.9 1.0
O A:THR14 4.4 6.3 1.0
CG A:HIS29 4.4 6.7 1.0
N A:THR14 4.4 5.8 1.0
CG2 A:THR257 4.4 7.7 1.0
CA A:THR13 4.5 5.8 1.0
C A:PHE262 4.6 10.9 1.0
CA A:THR14 4.6 6.5 1.0
CA A:PHE262 4.7 10.7 1.0
CB A:HIS29 4.7 6.6 1.0
CG A:PHE262 4.8 10.1 1.0
CG2 A:THR13 4.9 6.5 1.0

Chlorine binding site 2 out of 4 in 3daq

Go back to Chlorine Binding Sites List in 3daq
Chlorine binding site 2 out of 4 in the Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl294

b:12.2
occ:1.00
 OG1 B:THR13 2.9 6.5 1.0
O B:HOH337 3.0 10.5 1.0
O B:HOH343 3.0 11.1 1.0
CB B:PRO15 3.6 5.6 1.0
ND1 B:HIS29 3.6 6.9 1.0
N B:PRO15 3.7 5.4 1.0
CB B:THR13 3.7 4.8 1.0
CA B:PRO15 3.8 5.7 1.0
CB B:PHE262 3.8 10.0 1.0
O B:PHE262 3.9 10.6 1.0
CD B:PRO15 3.9 5.9 1.0
CB B:THR257 4.0 6.2 1.0
CG B:PRO15 4.0 6.1 1.0
C B:THR14 4.0 5.9 1.0
OG1 B:THR257 4.0 6.8 1.0
O B:THR13 4.1 6.2 1.0
C B:THR13 4.1 5.1 1.0
CE1 B:HIS29 4.1 7.1 1.0
CG B:HIS29 4.4 5.3 1.0
CG2 B:THR257 4.4 7.3 1.0
N B:THR14 4.4 5.5 1.0
O B:THR14 4.4 5.7 1.0
C B:PHE262 4.5 10.5 1.0
CA B:THR13 4.6 4.8 1.0
CA B:THR14 4.7 6.2 1.0
CB B:HIS29 4.8 6.0 1.0
CA B:PHE262 4.8 10.3 1.0
CG B:PHE262 4.8 9.5 1.0
CG2 B:THR13 4.9 5.0 1.0

Chlorine binding site 3 out of 4 in 3daq

Go back to Chlorine Binding Sites List in 3daq
Chlorine binding site 3 out of 4 in the Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl294

b:12.7
occ:1.00
 O C:HOH341 2.9 10.8 1.0
O C:HOH365 3.0 13.6 1.0
OG1 C:THR13 3.0 6.5 1.0
CB C:PRO15 3.5 7.3 1.0
ND1 C:HIS29 3.6 7.0 1.0
N C:PRO15 3.7 6.6 1.0
CB C:THR13 3.8 5.2 1.0
CB C:PHE262 3.8 11.0 1.0
CA C:PRO15 3.8 7.0 1.0
O C:PHE262 3.9 11.6 1.0
CD C:PRO15 3.9 6.7 1.0
CB C:THR257 3.9 7.4 1.0
CG C:PRO15 4.0 7.5 1.0
C C:THR14 4.0 6.3 1.0
OG1 C:THR257 4.1 8.2 1.0
O C:THR13 4.1 5.8 1.0
CE1 C:HIS29 4.2 7.2 1.0
C C:THR13 4.2 5.5 1.0
CG2 C:THR257 4.3 7.3 1.0
CG C:HIS29 4.4 5.8 1.0
O C:THR14 4.4 6.3 1.0
C C:PHE262 4.5 10.9 1.0
N C:THR14 4.5 5.8 1.0
CA C:THR13 4.6 5.1 1.0
CA C:THR14 4.7 6.2 1.0
CB C:HIS29 4.7 5.4 1.0
CA C:PHE262 4.7 10.9 1.0
CG C:PHE262 4.8 10.9 1.0
CG2 C:THR13 4.9 5.6 1.0

Chlorine binding site 4 out of 4 in 3daq

Go back to Chlorine Binding Sites List in 3daq
Chlorine binding site 4 out of 4 in the Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1

b:13.4
occ:1.00
 OG1 D:THR13 2.9 6.1 1.0
O D:HOH340 3.0 10.6 1.0
O D:HOH372 3.0 13.9 1.0
CB D:PRO15 3.6 6.3 1.0
ND1 D:HIS29 3.6 6.4 1.0
N D:PRO15 3.7 5.7 1.0
CB D:THR13 3.7 5.4 1.0
CB D:PHE262 3.8 10.3 1.0
CA D:PRO15 3.8 6.2 1.0
CD D:PRO15 3.9 5.6 1.0
CB D:THR257 3.9 6.3 1.0
O D:PHE262 3.9 11.4 1.0
CG D:PRO15 4.0 6.3 1.0
C D:THR14 4.0 5.8 1.0
OG1 D:THR257 4.0 6.9 1.0
O D:THR13 4.1 6.1 1.0
CE1 D:HIS29 4.1 6.8 1.0
C D:THR13 4.1 5.6 1.0
CG D:HIS29 4.4 5.4 1.0
CG2 D:THR257 4.4 6.7 1.0
N D:THR14 4.4 6.0 1.0
O D:THR14 4.4 6.0 1.0
C D:PHE262 4.5 10.6 1.0
CA D:THR13 4.6 5.2 1.0
CA D:THR14 4.6 6.2 1.0
CB D:HIS29 4.7 5.2 1.0
CA D:PHE262 4.8 10.6 1.0
CG D:PHE262 4.8 9.8 1.0
CG2 D:THR13 4.9 6.2 1.0

Reference:

B.R.Burgess, R.C.J.Dobson, M.F.Bailey, S.C.Atkinson, M.D.W.Griffin, G.B.Jameson, M.W.Parker, J.A.Gerrard, M.A.Perugini. Structure and Evolution of A Novel Dimeric Enzyme From A Clinically-Important Bacterial Pathogen. J.Biol.Chem. 2008.
ISSN: ESSN 1083-351X
PubMed: 18684709
DOI: 10.1074/JBC.M804231200
Page generated: Sat Dec 12 09:38:01 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy