Atomistry » Chlorine » PDB 3d44-3dgc » 3daq
Atomistry »
  Chlorine »
    PDB 3d44-3dgc »
      3daq »

Chlorine in PDB 3daq: Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus

Enzymatic activity of Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus

All present enzymatic activity of Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus:
4.2.1.52;

Protein crystallography data

The structure of Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus, PDB code: 3daq was solved by R.C.J.Dobson, B.R.Burgess, G.B.Jameson, J.A.Gerrard, M.W.Parker, M.A.Perugini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.25 / 1.45
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 65.410, 67.573, 77.998, 90.13, 68.85, 72.29
R / Rfree (%) 13.2 / 16.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus (pdb code 3daq). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus, PDB code: 3daq:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3daq

Go back to Chlorine Binding Sites List in 3daq
Chlorine binding site 1 out of 4 in the Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl294

b:13.3
occ:1.00
 OG1 A:THR13 2.9 7.1 1.0
O A:HOH340 3.0 12.8 1.0
O A:HOH327 3.0 10.8 1.0
CB A:PRO15 3.6 6.3 1.0
N A:PRO15 3.6 6.0 1.0
ND1 A:HIS29 3.6 7.4 1.0
CB A:THR13 3.7 6.1 1.0
CB A:PHE262 3.8 10.6 1.0
CA A:PRO15 3.8 6.6 1.0
CD A:PRO15 3.9 6.5 1.0
O A:PHE262 3.9 11.1 1.0
CB A:THR257 4.0 7.1 1.0
C A:THR14 4.0 6.3 1.0
CG A:PRO15 4.0 6.6 1.0
OG1 A:THR257 4.1 7.9 1.0
O A:THR13 4.1 5.9 1.0
C A:THR13 4.1 5.8 1.0
CE1 A:HIS29 4.2 7.9 1.0
O A:THR14 4.4 6.3 1.0
CG A:HIS29 4.4 6.7 1.0
N A:THR14 4.4 5.8 1.0
CG2 A:THR257 4.4 7.7 1.0
CA A:THR13 4.5 5.8 1.0
C A:PHE262 4.6 10.9 1.0
CA A:THR14 4.6 6.5 1.0
CA A:PHE262 4.7 10.7 1.0
CB A:HIS29 4.7 6.6 1.0
CG A:PHE262 4.8 10.1 1.0
CG2 A:THR13 4.9 6.5 1.0

Chlorine binding site 2 out of 4 in 3daq

Go back to Chlorine Binding Sites List in 3daq
Chlorine binding site 2 out of 4 in the Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl294

b:12.2
occ:1.00
 OG1 B:THR13 2.9 6.5 1.0
O B:HOH337 3.0 10.5 1.0
O B:HOH343 3.0 11.1 1.0
CB B:PRO15 3.6 5.6 1.0
ND1 B:HIS29 3.6 6.9 1.0
N B:PRO15 3.7 5.4 1.0
CB B:THR13 3.7 4.8 1.0
CA B:PRO15 3.8 5.7 1.0
CB B:PHE262 3.8 10.0 1.0
O B:PHE262 3.9 10.6 1.0
CD B:PRO15 3.9 5.9 1.0
CB B:THR257 4.0 6.2 1.0
CG B:PRO15 4.0 6.1 1.0
C B:THR14 4.0 5.9 1.0
OG1 B:THR257 4.0 6.8 1.0
O B:THR13 4.1 6.2 1.0
C B:THR13 4.1 5.1 1.0
CE1 B:HIS29 4.1 7.1 1.0
CG B:HIS29 4.4 5.3 1.0
CG2 B:THR257 4.4 7.3 1.0
N B:THR14 4.4 5.5 1.0
O B:THR14 4.4 5.7 1.0
C B:PHE262 4.5 10.5 1.0
CA B:THR13 4.6 4.8 1.0
CA B:THR14 4.7 6.2 1.0
CB B:HIS29 4.8 6.0 1.0
CA B:PHE262 4.8 10.3 1.0
CG B:PHE262 4.8 9.5 1.0
CG2 B:THR13 4.9 5.0 1.0

Chlorine binding site 3 out of 4 in 3daq

Go back to Chlorine Binding Sites List in 3daq
Chlorine binding site 3 out of 4 in the Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl294

b:12.7
occ:1.00
 O C:HOH341 2.9 10.8 1.0
O C:HOH365 3.0 13.6 1.0
OG1 C:THR13 3.0 6.5 1.0
CB C:PRO15 3.5 7.3 1.0
ND1 C:HIS29 3.6 7.0 1.0
N C:PRO15 3.7 6.6 1.0
CB C:THR13 3.8 5.2 1.0
CB C:PHE262 3.8 11.0 1.0
CA C:PRO15 3.8 7.0 1.0
O C:PHE262 3.9 11.6 1.0
CD C:PRO15 3.9 6.7 1.0
CB C:THR257 3.9 7.4 1.0
CG C:PRO15 4.0 7.5 1.0
C C:THR14 4.0 6.3 1.0
OG1 C:THR257 4.1 8.2 1.0
O C:THR13 4.1 5.8 1.0
CE1 C:HIS29 4.2 7.2 1.0
C C:THR13 4.2 5.5 1.0
CG2 C:THR257 4.3 7.3 1.0
CG C:HIS29 4.4 5.8 1.0
O C:THR14 4.4 6.3 1.0
C C:PHE262 4.5 10.9 1.0
N C:THR14 4.5 5.8 1.0
CA C:THR13 4.6 5.1 1.0
CA C:THR14 4.7 6.2 1.0
CB C:HIS29 4.7 5.4 1.0
CA C:PHE262 4.7 10.9 1.0
CG C:PHE262 4.8 10.9 1.0
CG2 C:THR13 4.9 5.6 1.0

Chlorine binding site 4 out of 4 in 3daq

Go back to Chlorine Binding Sites List in 3daq
Chlorine binding site 4 out of 4 in the Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1

b:13.4
occ:1.00
 OG1 D:THR13 2.9 6.1 1.0
O D:HOH340 3.0 10.6 1.0
O D:HOH372 3.0 13.9 1.0
CB D:PRO15 3.6 6.3 1.0
ND1 D:HIS29 3.6 6.4 1.0
N D:PRO15 3.7 5.7 1.0
CB D:THR13 3.7 5.4 1.0
CB D:PHE262 3.8 10.3 1.0
CA D:PRO15 3.8 6.2 1.0
CD D:PRO15 3.9 5.6 1.0
CB D:THR257 3.9 6.3 1.0
O D:PHE262 3.9 11.4 1.0
CG D:PRO15 4.0 6.3 1.0
C D:THR14 4.0 5.8 1.0
OG1 D:THR257 4.0 6.9 1.0
O D:THR13 4.1 6.1 1.0
CE1 D:HIS29 4.1 6.8 1.0
C D:THR13 4.1 5.6 1.0
CG D:HIS29 4.4 5.4 1.0
CG2 D:THR257 4.4 6.7 1.0
N D:THR14 4.4 6.0 1.0
O D:THR14 4.4 6.0 1.0
C D:PHE262 4.5 10.6 1.0
CA D:THR13 4.6 5.2 1.0
CA D:THR14 4.6 6.2 1.0
CB D:HIS29 4.7 5.2 1.0
CA D:PHE262 4.8 10.6 1.0
CG D:PHE262 4.8 9.8 1.0
CG2 D:THR13 4.9 6.2 1.0

Reference:

B.R.Burgess, R.C.J.Dobson, M.F.Bailey, S.C.Atkinson, M.D.W.Griffin, G.B.Jameson, M.W.Parker, J.A.Gerrard, M.A.Perugini. Structure and Evolution of A Novel Dimeric Enzyme From A Clinically-Important Bacterial Pathogen. J.Biol.Chem. 2008.
ISSN: ESSN 1083-351X
PubMed: 18684709
DOI: 10.1074/JBC.M804231200
Page generated: Sat Jul 20 18:06:12 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy