Atomistry » Chlorine » PDB 3d44-3dgc » 3dcj
Atomistry »
  Chlorine »
    PDB 3d44-3dgc »
      3dcj »

Chlorine in PDB 3dcj: Crystal Structure of Glycinamide Formyltransferase (Purn) From Mycobacterium Tuberculosis in Complex with 5-Methyl-5,6,7,8- Tetrahydrofolic Acid Derivative

Enzymatic activity of Crystal Structure of Glycinamide Formyltransferase (Purn) From Mycobacterium Tuberculosis in Complex with 5-Methyl-5,6,7,8- Tetrahydrofolic Acid Derivative

All present enzymatic activity of Crystal Structure of Glycinamide Formyltransferase (Purn) From Mycobacterium Tuberculosis in Complex with 5-Methyl-5,6,7,8- Tetrahydrofolic Acid Derivative:
2.1.2.2;

Protein crystallography data

The structure of Crystal Structure of Glycinamide Formyltransferase (Purn) From Mycobacterium Tuberculosis in Complex with 5-Methyl-5,6,7,8- Tetrahydrofolic Acid Derivative, PDB code: 3dcj was solved by Z.Zhang, C.J.Squire, E.N.Baker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.58 / 2.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 62.153, 61.660, 61.525, 90.00, 103.31, 90.00
R / Rfree (%) 18.4 / 24.3

Other elements in 3dcj:

The structure of Crystal Structure of Glycinamide Formyltransferase (Purn) From Mycobacterium Tuberculosis in Complex with 5-Methyl-5,6,7,8- Tetrahydrofolic Acid Derivative also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Glycinamide Formyltransferase (Purn) From Mycobacterium Tuberculosis in Complex with 5-Methyl-5,6,7,8- Tetrahydrofolic Acid Derivative (pdb code 3dcj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Glycinamide Formyltransferase (Purn) From Mycobacterium Tuberculosis in Complex with 5-Methyl-5,6,7,8- Tetrahydrofolic Acid Derivative, PDB code: 3dcj:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3dcj

Go back to Chlorine Binding Sites List in 3dcj
Chlorine binding site 1 out of 2 in the Crystal Structure of Glycinamide Formyltransferase (Purn) From Mycobacterium Tuberculosis in Complex with 5-Methyl-5,6,7,8- Tetrahydrofolic Acid Derivative


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Glycinamide Formyltransferase (Purn) From Mycobacterium Tuberculosis in Complex with 5-Methyl-5,6,7,8- Tetrahydrofolic Acid Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:36.3
occ:1.00
N A:PRO165 3.6 20.0 1.0
CD A:PRO165 3.7 20.4 1.0
C A:VAL164 3.9 19.9 1.0
CB A:PRO163 3.9 16.1 1.0
CA A:PRO165 4.0 20.7 1.0
N A:VAL164 4.1 17.7 1.0
CB A:PRO165 4.1 20.4 1.0
CG A:PRO163 4.2 17.6 1.0
CG1 A:VAL141 4.2 15.4 1.0
CG2 A:VAL141 4.3 15.1 1.0
CA A:VAL164 4.3 18.8 1.0
C A:PRO163 4.3 17.6 1.0
O A:VAL164 4.4 20.1 1.0
CG A:PRO165 4.5 19.2 1.0
O A:PRO163 4.6 19.3 1.0
CA A:PRO163 4.8 16.6 1.0
CB A:VAL141 4.8 12.8 1.0

Chlorine binding site 2 out of 2 in 3dcj

Go back to Chlorine Binding Sites List in 3dcj
Chlorine binding site 2 out of 2 in the Crystal Structure of Glycinamide Formyltransferase (Purn) From Mycobacterium Tuberculosis in Complex with 5-Methyl-5,6,7,8- Tetrahydrofolic Acid Derivative


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Glycinamide Formyltransferase (Purn) From Mycobacterium Tuberculosis in Complex with 5-Methyl-5,6,7,8- Tetrahydrofolic Acid Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:32.3
occ:1.00
N B:PRO165 3.7 16.1 1.0
CD B:PRO165 3.8 16.4 1.0
CA B:PRO165 4.1 17.7 1.0
C B:VAL164 4.1 15.3 1.0
CB B:PRO165 4.2 17.9 1.0
CB B:PRO163 4.2 14.1 1.0
CG1 B:VAL141 4.3 16.8 1.0
N B:VAL164 4.3 13.4 1.0
CG2 B:VAL141 4.3 18.6 1.0
CG B:PRO165 4.5 18.8 1.0
CA B:VAL164 4.5 13.9 1.0
C B:PRO163 4.5 14.6 1.0
CG B:PRO163 4.5 15.7 1.0
O B:VAL164 4.7 14.5 1.0
O B:PRO163 4.8 15.2 1.0
CB B:VAL141 4.9 16.5 1.0

Reference:

Z.Zhang, T.T.Caradoc-Davies, J.M.Dickson, E.N.Baker, C.J.Squire. Structures of Glycinamide Ribonucleotide Transformylase (Purn) From Mycobacterium Tuberculosis Reveal A Novel Dimer with Relevance to Drug Discovery. J.Mol.Biol. V. 389 722 2009.
ISSN: ISSN 0022-2836
PubMed: 19394344
DOI: 10.1016/J.JMB.2009.04.044
Page generated: Sat Dec 12 09:38:06 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy