Chlorine in PDB 3di4: Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution

The structure of Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution, PDB code: 3di4 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.41 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	51.465, 95.764, 58.689, 90.00, 109.04, 90.00
R / Rfree (%)	14.1 / 17.5

The structure of Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Chlorine atom in the Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution (pdb code 3di4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution, PDB code: 3di4:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl287 b:36.5 occ:1.00 O A:HOH338 3.2 20.8 1.0 N A:THR148 3.3 16.1 1.0 OG1 A:THR148 3.3 26.0 1.0 NZ B:LYS97 3.6 23.1 1.0 N A:ARG149 3.6 12.8 1.0 O A:ARG149 3.9 13.4 1.0 C A:ARG149 4.0 10.0 1.0 CE2 A:TYR209 4.0 17.1 1.0 OH B:TYR24 4.1 26.7 1.0 CA A:GLY147 4.1 14.3 1.0 CA A:THR148 4.2 15.9 1.0 C A:GLY147 4.2 18.7 1.0 CE B:LYS97 4.2 30.7 1.0 CB B:ALA100 4.2 13.6 1.0 CE2 B:TYR24 4.3 19.6 1.0 CB A:THR148 4.3 18.2 1.0 CA A:ARG149 4.3 11.0 1.0 O B:HOH334 4.4 19.2 1.0 C A:THR148 4.4 14.3 1.0 N A:CYS150 4.5 11.6 1.0 O A:HOH342 4.6 20.6 1.0 CZ B:TYR24 4.7 21.1 1.0 CD2 A:TYR209 4.7 13.6 1.0 CG2 A:THR148 4.9 18.6 1.0 OH A:TYR209 4.9 14.9 1.0 CZ A:TYR209 4.9 13.3 1.0

Chlorine binding site 2 out of 4 in the Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl288 b:31.5 occ:1.00 O A:HOH494 2.4 36.4 1.0 O A:HOH378 2.4 24.0 1.0 N A:GLY161 3.6 20.3 1.0 CA A:GLY161 3.7 16.8 1.0 O A:HOH496 4.0 34.8 1.0 NE2 A:HIS162 4.0 14.8 1.0 CD2 A:HIS162 4.1 14.9 1.0 O A:HOH453 4.3 31.7 1.0 C A:GLY160 4.7 21.2 1.0 C A:GLY161 4.8 14.4 1.0

Chlorine binding site 3 out of 4 in the Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl288 b:34.5 occ:1.00 O B:HOH404 2.5 26.2 1.0 O B:HOH649 3.2 57.2 1.0 N B:GLY161 3.5 20.0 1.0 CA B:GLY161 3.8 16.3 1.0 NE2 B:HIS162 4.1 16.2 1.0 O B:HOH405 4.2 27.9 1.0 CD2 B:HIS162 4.3 16.8 1.0 C B:GLY160 4.6 20.2 1.0 C B:GLY161 4.9 15.3 1.0 CA B:GLY160 4.9 19.6 1.0

Chlorine binding site 4 out of 4 in the Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl289 b:55.0 occ:1.00 NH2 B:ARG55 3.3 34.1 1.0 O B:HOH433 3.4 30.1 1.0 N B:CYS253 3.5 15.8 1.0 NH1 B:ARG55 3.8 28.9 1.0 O B:ALA251 4.0 30.2 1.0 CZ B:ARG55 4.0 22.1 1.0 CA B:SER252 4.1 24.2 1.0 O B:CYS253 4.1 18.0 1.0 C B:SER252 4.3 20.1 1.0 CA B:CYS253 4.4 15.6 1.0 CB B:CYS253 4.5 16.3 1.0 C B:CYS253 4.7 17.2 1.0 OG B:SER252 4.8 32.1 1.0 CB B:SER252 4.9 28.1 1.0 C B:ALA251 4.9 28.7 1.0 N B:SER252 5.0 25.5 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.