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Chlorine in PDB 3di9: Crystal Structure of Bovine Pancreatic Ribonuclease A Variant (I81A)

Enzymatic activity of Crystal Structure of Bovine Pancreatic Ribonuclease A Variant (I81A)

All present enzymatic activity of Crystal Structure of Bovine Pancreatic Ribonuclease A Variant (I81A):
3.1.27.5;

Protein crystallography data

The structure of Crystal Structure of Bovine Pancreatic Ribonuclease A Variant (I81A), PDB code: 3di9 was solved by K.Kurpiewska, J.Font, M.Ribo, M.Vilanova, K.Lewinski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.00
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 63.982, 63.982, 63.716, 90.00, 90.00, 120.00
R / Rfree (%) 19.8 / 24.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Bovine Pancreatic Ribonuclease A Variant (I81A) (pdb code 3di9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Bovine Pancreatic Ribonuclease A Variant (I81A), PDB code: 3di9:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3di9

Go back to Chlorine Binding Sites List in 3di9
Chlorine binding site 1 out of 2 in the Crystal Structure of Bovine Pancreatic Ribonuclease A Variant (I81A)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Bovine Pancreatic Ribonuclease A Variant (I81A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl125

b:32.6
occ:1.00
O A:HOH1083 2.8 30.0 1.0
O A:HOH1022 3.6 14.6 1.0
CB A:ALA6 4.6 10.3 1.0
O A:HOH1025 4.7 13.5 1.0

Chlorine binding site 2 out of 2 in 3di9

Go back to Chlorine Binding Sites List in 3di9
Chlorine binding site 2 out of 2 in the Crystal Structure of Bovine Pancreatic Ribonuclease A Variant (I81A)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Bovine Pancreatic Ribonuclease A Variant (I81A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl126

b:19.0
occ:1.00
N A:THR45 3.2 11.8 1.0
CE1 A:HIS12 3.5 8.8 1.0
CA A:ASN44 3.6 12.4 1.0
OG1 A:THR45 3.8 13.6 1.0
C A:ASN44 3.9 13.8 1.0
CD1 A:PHE120 4.0 23.5 1.0
CB A:THR45 4.0 11.7 1.0
ND1 A:HIS12 4.1 9.2 1.0
OD1 A:ASN44 4.2 13.0 1.0
CA A:THR45 4.2 12.2 1.0
O A:VAL43 4.2 13.7 1.0
N A:ASN44 4.4 15.1 1.0
NE2 A:HIS12 4.5 12.5 1.0
CB A:PHE120 4.5 23.1 1.0
CG A:PHE120 4.5 24.0 1.0
C A:VAL43 4.6 16.2 1.0
NZ A:LYS41 4.6 23.4 1.0
CG A:ASN44 4.7 12.2 1.0
CB A:ASN44 4.7 14.2 1.0
O A:PHE120 4.7 31.3 1.0
CE1 A:PHE120 4.8 23.4 1.0
CG1 A:VAL43 4.8 13.7 1.0
O A:THR45 4.8 10.6 1.0

Reference:

K.Kurpiewska, J.Font, M.Ribo, M.Vilanova, K.Lewinski. X-Ray Crystallographic Studies of Rnase A Variants Engineered at the Most Destabilizing Positions of the Main Hydrophobic Core: Further Insight Into Protein Stability Proteins V. 77 658 2009.
ISSN: ISSN 0887-3585
PubMed: 19544568
DOI: 10.1002/PROT.22480
Page generated: Sat Jul 20 18:16:51 2024

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