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Chlorine in PDB 3dna: Iodobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant (Seleno Version)

Enzymatic activity of Iodobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant (Seleno Version)

All present enzymatic activity of Iodobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant (Seleno Version):
3.2.1.17;

Protein crystallography data

The structure of Iodobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant (Seleno Version), PDB code: 3dna was solved by L.Liu, B.W.Matthews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.17 / 1.70
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 60.031, 60.031, 95.956, 90.00, 90.00, 120.00
R / Rfree (%) 18.3 / 21.7

Other elements in 3dna:

The structure of Iodobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant (Seleno Version) also contains other interesting chemical elements:

Iodine (I) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Iodobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant (Seleno Version) (pdb code 3dna). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Iodobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant (Seleno Version), PDB code: 3dna:

Chlorine binding site 1 out of 1 in 3dna

Go back to Chlorine Binding Sites List in 3dna
Chlorine binding site 1 out of 1 in the Iodobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant (Seleno Version)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Iodobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant (Seleno Version) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl902

b:49.4
occ:1.00
ND2 A:ASN144 3.4 16.5 1.0
NH1 A:ARG148 3.5 13.6 1.0
CB A:ASN144 3.7 11.4 1.0
CG A:ASN144 4.1 14.1 1.0
NH2 A:ARG148 4.3 13.3 1.0
CZ A:ARG148 4.4 12.7 1.0
O A:HOH931 4.9 15.7 1.0
O A:HOH1073 4.9 34.1 1.0

Reference:

L.Liu, W.A.Baase, B.W.Matthews. Halogenated Benzenes Bound Within A Non-Polar Cavity in T4 Lysozyme Provide Examples of I...S and I...Se Halogen-Bonding. J.Mol.Biol. V. 385 595 2009.
ISSN: ISSN 0022-2836
PubMed: 19014950
DOI: 10.1016/J.JMB.2008.10.086
Page generated: Sat Dec 12 09:38:51 2020

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