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Chlorine in PDB 3dtk: Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae

Protein crystallography data

The structure of Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae, PDB code: 3dtk was solved by A.Vujicic-Zagar, R.Dulermo, M.Le Gorrec, F.Vannier, P.Servant, S.Sommer, A.De Groot, L.Serre, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.83 / 3.24
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 87.260, 52.672, 63.221, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / 27.7

Other elements in 3dtk:

The structure of Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae (pdb code 3dtk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae, PDB code: 3dtk:

Chlorine binding site 1 out of 1 in 3dtk

Go back to Chlorine Binding Sites List in 3dtk
Chlorine binding site 1 out of 1 in the Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl282

b:79.7
occ:1.00
OE1 A:GLU113 2.5 80.0 1.0
ZN A:ZN283 2.6 79.8 1.0
CD A:GLU113 3.5 79.9 1.0
OE2 A:GLU83 3.5 73.8 1.0
OE2 A:GLU113 3.8 80.3 1.0
NE2 A:HIS82 4.0 73.9 1.0
ZN A:ZN284 4.0 78.4 1.0
O A:GLY56 4.1 84.5 1.0
CD2 A:HIS82 4.3 72.8 1.0
CD A:GLU83 4.6 73.4 1.0
CG A:GLU113 4.9 79.6 1.0
CE1 A:HIS82 4.9 72.9 1.0
C A:GLY56 4.9 84.8 1.0

Reference:

A.Vujicic-Zagar, R.Dulermo, M.Le Gorrec, F.Vannier, P.Servant, S.Sommer, A.De Groot, L.Serre. Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae J.Mol.Biol. V. 386 704 2009.
ISSN: ISSN 0022-2836
PubMed: 19150362
DOI: 10.1016/J.JMB.2008.12.062
Page generated: Sat Dec 12 09:39:11 2020

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