Atomistry » Chlorine » PDB 3dzc-3ec0 » 3e05
Atomistry »
  Chlorine »
    PDB 3dzc-3ec0 »
      3e05 »

Chlorine in PDB 3e05: Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15

Enzymatic activity of Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15

All present enzymatic activity of Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15:
2.1.1.132;

Protein crystallography data

The structure of Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15, PDB code: 3e05 was solved by Y.Patskovsky, U.A.Ramagopal, R.Toro, M.Dickey, S.Hu, M.Maletic, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center For Structuralgenomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 124.710, 83.451, 149.056, 90.00, 95.72, 90.00
R / Rfree (%) 21.6 / 26.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15 (pdb code 3e05). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15, PDB code: 3e05:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 3e05

Go back to Chlorine Binding Sites List in 3e05
Chlorine binding site 1 out of 8 in the Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1

b:34.2
occ:1.00
 OG A:SER261 2.9 29.7 1.0
O A:HOH451 3.1 34.9 1.0
N A:SER261 3.3 27.6 1.0
N A:SER259 3.5 34.2 1.0
N A:THR232 3.5 32.9 1.0
CB A:SER261 3.6 31.3 1.0
CB A:SER259 3.6 35.4 1.0
CG1 A:ILE231 3.7 37.1 1.0
O A:ALA257 3.7 29.1 1.0
N A:ALA260 3.8 27.4 1.0
CA A:ILE231 3.8 34.9 1.0
CA A:SER259 3.9 36.3 1.0
O A:HOH427 3.9 28.9 1.0
C A:SER259 4.0 34.0 1.0
CA A:SER261 4.0 28.2 1.0
O A:HOH452 4.0 45.7 1.0
C A:ILE231 4.2 33.2 1.0
OG1 A:THR232 4.3 28.7 1.0
C A:ALA260 4.4 28.6 1.0
CB A:ILE231 4.4 36.4 1.0
O A:LEU230 4.5 33.3 1.0
CB A:THR232 4.5 30.2 1.0
CA A:ALA260 4.5 32.8 1.0
OG A:SER259 4.5 39.7 1.0
CA A:THR232 4.5 30.1 1.0
C A:GLY258 4.6 35.1 1.0
N A:VAL262 4.6 24.8 1.0
N A:ILE231 4.8 32.9 1.0
CA A:GLY258 4.8 34.4 1.0
O A:SER259 4.8 32.6 1.0
C A:ALA257 4.8 29.7 1.0
C A:SER261 4.8 27.3 1.0
CD1 A:ILE231 4.9 36.0 1.0
O A:THR232 5.0 30.6 1.0
C A:LEU230 5.0 37.4 1.0

Chlorine binding site 2 out of 8 in 3e05

Go back to Chlorine Binding Sites List in 3e05
Chlorine binding site 2 out of 8 in the Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1

b:29.0
occ:1.00
 O B:HOH480 3.1 31.9 1.0
OG B:SER261 3.1 26.5 1.0
N B:SER259 3.4 30.5 1.0
N B:SER261 3.4 24.7 1.0
CB B:SER261 3.6 31.7 1.0
N B:THR232 3.6 34.4 1.0
CB B:SER259 3.6 34.5 1.0
N B:ALA260 3.7 27.4 1.0
O B:ALA257 3.8 27.6 1.0
CA B:SER259 3.8 35.1 1.0
CG1 B:ILE231 3.9 35.2 1.0
CA B:ILE231 3.9 32.6 1.0
C B:SER259 3.9 33.8 1.0
CA B:SER261 4.1 28.9 1.0
O B:HOH490 4.2 41.8 1.0
O B:HOH419 4.2 26.8 1.0
OG1 B:THR232 4.3 30.0 1.0
C B:ILE231 4.3 34.3 1.0
C B:ALA260 4.4 28.7 1.0
CB B:THR232 4.5 26.9 1.0
C B:GLY258 4.5 33.9 1.0
CA B:ALA260 4.5 29.6 1.0
CB B:ILE231 4.5 34.5 1.0
O B:LEU230 4.5 31.1 1.0
OG B:SER259 4.6 39.2 1.0
N B:VAL262 4.6 26.5 1.0
CA B:THR232 4.6 30.8 1.0
CA B:GLY258 4.7 26.8 1.0
O B:SER259 4.8 31.5 1.0
C B:ALA257 4.9 27.1 1.0
C B:SER261 4.9 28.4 1.0
N B:ILE231 4.9 34.5 1.0
O B:THR232 5.0 26.4 1.0

Chlorine binding site 3 out of 8 in 3e05

Go back to Chlorine Binding Sites List in 3e05
Chlorine binding site 3 out of 8 in the Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1

b:29.8
occ:1.00
 OG C:SER261 2.9 30.8 1.0
O C:HOH472 3.1 37.8 1.0
N C:SER261 3.4 28.7 1.0
N C:SER259 3.4 27.4 1.0
N C:THR232 3.6 33.7 1.0
CB C:SER259 3.6 33.6 1.0
CB C:SER261 3.7 29.5 1.0
O C:ALA257 3.7 29.1 1.0
CG1 C:ILE231 3.7 33.6 1.0
N C:ALA260 3.7 30.5 1.0
O C:HOH420 3.8 29.0 1.0
CA C:ILE231 3.8 32.7 1.0
CA C:SER259 3.8 31.2 1.0
C C:SER259 4.0 30.3 1.0
O C:HOH454 4.1 38.2 1.0
CA C:SER261 4.1 26.9 1.0
OG1 C:THR232 4.2 29.0 1.0
C C:ILE231 4.2 35.5 1.0
C C:ALA260 4.4 27.4 1.0
CB C:ILE231 4.4 36.6 1.0
CA C:ALA260 4.5 29.2 1.0
CB C:THR232 4.5 29.3 1.0
OG C:SER259 4.5 34.3 1.0
O C:LEU230 4.5 30.0 1.0
C C:GLY258 4.5 32.0 1.0
CA C:THR232 4.6 29.5 1.0
N C:VAL262 4.7 26.7 1.0
CA C:GLY258 4.7 30.0 1.0
N C:ILE231 4.8 32.6 1.0
O C:SER259 4.8 28.1 1.0
C C:ALA257 4.8 27.3 1.0
CD1 C:ILE231 4.9 34.2 1.0
C C:SER261 4.9 25.8 1.0
C C:LEU230 5.0 36.4 1.0
O C:THR232 5.0 27.9 1.0

Chlorine binding site 4 out of 8 in 3e05

Go back to Chlorine Binding Sites List in 3e05
Chlorine binding site 4 out of 8 in the Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1

b:37.5
occ:1.00
 OG D:SER261 3.0 28.9 1.0
O D:HOH458 3.3 34.7 1.0
N D:SER261 3.4 30.4 1.0
N D:SER259 3.4 35.3 1.0
CB D:SER259 3.6 36.8 1.0
CB D:SER261 3.6 31.8 1.0
N D:THR232 3.6 36.5 1.0
N D:ALA260 3.6 33.1 1.0
CG1 D:ILE231 3.7 38.4 1.0
O D:ALA257 3.7 31.2 1.0
CA D:SER259 3.8 35.5 1.0
CA D:ILE231 3.8 37.9 1.0
C D:SER259 3.9 34.7 1.0
CA D:SER261 4.0 29.4 1.0
O D:HOH420 4.0 39.6 1.0
C D:ILE231 4.2 38.0 1.0
O D:HOH472 4.3 45.9 1.0
OG1 D:THR232 4.3 31.1 1.0
C D:ALA260 4.4 28.5 1.0
CB D:ILE231 4.4 35.8 1.0
OG D:SER259 4.4 42.4 1.0
CA D:ALA260 4.4 34.6 1.0
C D:GLY258 4.5 35.8 1.0
CB D:THR232 4.5 31.2 1.0
O D:LEU230 4.6 38.3 1.0
CA D:THR232 4.7 31.1 1.0
N D:VAL262 4.7 22.1 1.0
O D:SER259 4.7 34.4 1.0
CA D:GLY258 4.8 31.0 1.0
N D:ILE231 4.8 37.2 1.0
C D:ALA257 4.8 31.2 1.0
C D:SER261 4.9 27.6 1.0
CD1 D:ILE231 4.9 35.7 1.0

Chlorine binding site 5 out of 8 in 3e05

Go back to Chlorine Binding Sites List in 3e05
Chlorine binding site 5 out of 8 in the Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl1

b:38.8
occ:1.00
 OG E:SER261 3.0 34.4 1.0
O E:HOH433 3.3 34.3 1.0
N E:SER259 3.4 38.5 1.0
N E:SER261 3.5 29.9 1.0
CB E:SER259 3.6 38.6 1.0
CB E:SER261 3.6 32.8 1.0
O E:ALA257 3.7 31.4 1.0
N E:ALA260 3.7 32.2 1.0
N E:THR232 3.7 35.4 1.0
CA E:SER259 3.9 37.6 1.0
CA E:ILE231 3.9 37.7 1.0
CG1 E:ILE231 3.9 37.8 1.0
C E:SER259 4.0 35.5 1.0
O E:HOH423 4.1 33.0 1.0
CA E:SER261 4.1 29.9 1.0
O E:HOH456 4.2 41.9 1.0
OG E:SER259 4.2 42.8 1.0
C E:ILE231 4.3 37.1 1.0
OG1 E:THR232 4.4 34.3 1.0
O E:LEU230 4.4 38.3 1.0
C E:ALA260 4.5 29.5 1.0
CB E:ILE231 4.5 38.2 1.0
CA E:ALA260 4.5 32.9 1.0
C E:GLY258 4.5 36.8 1.0
CA E:GLY258 4.7 32.5 1.0
N E:VAL262 4.7 31.2 1.0
CB E:THR232 4.7 33.0 1.0
C E:ALA257 4.8 31.2 1.0
O E:SER259 4.8 37.0 1.0
N E:ILE231 4.8 36.8 1.0
CA E:THR232 4.8 29.5 1.0
C E:LEU230 4.9 40.8 1.0
C E:SER261 5.0 29.4 1.0
CD1 E:ILE231 5.0 37.8 1.0

Chlorine binding site 6 out of 8 in 3e05

Go back to Chlorine Binding Sites List in 3e05
Chlorine binding site 6 out of 8 in the Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl1

b:34.2
occ:1.00
 O F:HOH452 2.9 39.3 1.0
OG F:SER261 3.1 31.6 1.0
N F:SER259 3.3 35.0 1.0
N F:THR232 3.5 32.6 1.0
N F:SER261 3.6 30.6 1.0
O F:ALA257 3.6 31.7 1.0
CB F:SER259 3.7 37.2 1.0
CA F:ILE231 3.7 35.4 1.0
N F:ALA260 3.8 32.8 1.0
O F:HOH460 3.8 36.7 1.0
CB F:SER261 3.8 29.6 1.0
CG1 F:ILE231 3.8 37.0 1.0
CA F:SER259 3.8 33.6 1.0
O F:HOH420 3.9 27.9 1.0
C F:SER259 4.0 31.4 1.0
C F:ILE231 4.1 34.1 1.0
CA F:SER261 4.3 29.4 1.0
OG1 F:THR232 4.3 32.1 1.0
CB F:ILE231 4.3 36.3 1.0
O F:LEU230 4.4 36.6 1.0
C F:GLY258 4.4 35.5 1.0
CB F:THR232 4.5 32.9 1.0
C F:ALA260 4.5 30.7 1.0
CA F:THR232 4.6 30.7 1.0
CA F:ALA260 4.6 33.1 1.0
OG F:SER259 4.6 38.4 1.0
CA F:GLY258 4.6 32.5 1.0
N F:ILE231 4.6 36.2 1.0
C F:ALA257 4.8 27.9 1.0
N F:VAL262 4.8 26.3 1.0
C F:LEU230 4.8 38.9 1.0
O F:SER259 4.9 33.2 1.0
O F:THR232 5.0 32.2 1.0
CD1 F:ILE231 5.0 36.5 1.0

Chlorine binding site 7 out of 8 in 3e05

Go back to Chlorine Binding Sites List in 3e05
Chlorine binding site 7 out of 8 in the Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl1

b:36.0
occ:1.00
 OG G:SER261 2.8 35.1 1.0
N G:SER261 3.4 32.4 1.0
CB G:SER261 3.5 32.3 1.0
CB G:SER259 3.5 37.3 1.0
N G:THR232 3.6 33.7 1.0
N G:SER259 3.6 34.3 1.0
CG1 G:ILE231 3.7 36.5 1.0
N G:ALA260 3.8 33.1 1.0
CA G:ILE231 3.8 35.9 1.0
CA G:SER259 3.9 35.9 1.0
O G:ALA257 3.9 31.8 1.0
O G:HOH462 3.9 38.0 1.0
C G:SER259 4.0 33.8 1.0
O G:HOH427 4.0 42.5 1.0
CA G:SER261 4.0 31.1 1.0
C G:ILE231 4.2 34.7 1.0
OG1 G:THR232 4.2 33.5 1.0
C G:ALA260 4.3 34.3 1.0
OG G:SER259 4.4 43.4 1.0
CB G:ILE231 4.4 36.4 1.0
CA G:ALA260 4.4 34.8 1.0
CB G:THR232 4.4 29.3 1.0
O G:LEU230 4.5 33.6 1.0
N G:VAL262 4.6 29.9 1.0
CA G:THR232 4.6 28.3 1.0
C G:GLY258 4.7 34.4 1.0
O G:SER259 4.7 35.9 1.0
N G:ILE231 4.8 34.1 1.0
C G:SER261 4.8 29.8 1.0
CD1 G:ILE231 4.9 33.4 1.0
CA G:GLY258 5.0 31.4 1.0
C G:LEU230 5.0 37.5 1.0

Chlorine binding site 8 out of 8 in 3e05

Go back to Chlorine Binding Sites List in 3e05
Chlorine binding site 8 out of 8 in the Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens Gs-15 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl1

b:48.2
occ:1.00
 OG H:SER261 2.9 33.8 1.0
N H:SER259 3.4 37.3 1.0
O H:HOH444 3.4 41.2 1.0
CB H:SER259 3.5 35.0 1.0
N H:THR232 3.5 37.6 1.0
N H:SER261 3.6 33.4 1.0
CB H:SER261 3.6 35.4 1.0
CG1 H:ILE231 3.6 37.2 1.0
CA H:ILE231 3.7 37.5 1.0
CA H:SER259 3.8 37.1 1.0
N H:ALA260 3.8 32.4 1.0
O H:ALA257 3.9 33.6 1.0
C H:SER259 4.0 36.7 1.0
O H:HOH418 4.1 32.3 1.0
C H:ILE231 4.2 36.3 1.0
CA H:SER261 4.2 31.7 1.0
CB H:ILE231 4.3 36.3 1.0
OG H:SER259 4.3 42.6 1.0
OG1 H:THR232 4.3 35.9 1.0
O H:LEU230 4.4 37.2 1.0
C H:GLY258 4.5 38.1 1.0
C H:ALA260 4.5 31.9 1.0
CB H:THR232 4.6 33.9 1.0
CA H:ALA260 4.6 33.1 1.0
CA H:THR232 4.6 31.9 1.0
CA H:GLY258 4.7 31.8 1.0
N H:ILE231 4.7 38.0 1.0
N H:VAL262 4.7 32.0 1.0
O H:SER259 4.8 39.2 1.0
CD1 H:ILE231 4.8 37.5 1.0
C H:LEU230 4.9 41.0 1.0

Reference:

Y.Patskovsky, U.A.Ramagopal, R.Toro, M.Dickey, S.Hu, M.Maletic, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of Precorrin-6Y C5,15-Methyltransferase From Geobacter Metallireducens To Be Published.
Page generated: Sat Jul 20 18:36:16 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy