Chlorine in PDB 3e82: Crystal Structure of A Putative Oxidoreductase From Klebsiella Pneumoniae
Protein crystallography data
The structure of Crystal Structure of A Putative Oxidoreductase From Klebsiella Pneumoniae, PDB code: 3e82
was solved by
S.Eswaramoorthy,
M.B.Mohammad,
C.A.Thomas,
A.C.Brown,
S.K.Burley,
S.Swaminathan,
New York Sgx Research Center Forstructural Genomics (Nysgxrc),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.87 /
2.04
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
52.910,
79.750,
209.144,
90.00,
94.00,
90.00
|
R / Rfree (%)
|
20.9 /
23.2
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of A Putative Oxidoreductase From Klebsiella Pneumoniae
(pdb code 3e82). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of A Putative Oxidoreductase From Klebsiella Pneumoniae, PDB code: 3e82:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 3e82
Go back to
Chlorine Binding Sites List in 3e82
Chlorine binding site 1 out
of 4 in the Crystal Structure of A Putative Oxidoreductase From Klebsiella Pneumoniae
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of A Putative Oxidoreductase From Klebsiella Pneumoniae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1
b:24.2
occ:1.00
|
ND1
|
A:HIS191
|
2.9
|
35.8
|
1.0
|
ND1
|
A:HIS133
|
3.1
|
19.9
|
1.0
|
O
|
A:HOH393
|
3.2
|
19.8
|
1.0
|
NZ
|
A:LYS106
|
3.4
|
23.8
|
1.0
|
CE
|
A:LYS106
|
3.6
|
23.6
|
1.0
|
CA
|
A:HIS191
|
3.6
|
20.6
|
1.0
|
CA
|
A:HIS133
|
3.6
|
19.2
|
1.0
|
N
|
A:HIS191
|
3.7
|
18.8
|
1.0
|
CE1
|
A:HIS191
|
3.7
|
35.1
|
1.0
|
CD
|
A:LYS106
|
3.8
|
23.6
|
1.0
|
C
|
A:PRO190
|
3.9
|
19.9
|
1.0
|
O
|
A:PRO190
|
4.0
|
18.3
|
1.0
|
CG
|
A:HIS191
|
4.0
|
33.3
|
1.0
|
CG
|
A:ARG135
|
4.0
|
24.6
|
1.0
|
CG
|
A:HIS133
|
4.0
|
20.4
|
1.0
|
CE1
|
A:HIS133
|
4.1
|
20.5
|
1.0
|
CB
|
A:HIS133
|
4.1
|
18.5
|
1.0
|
O
|
A:PHE132
|
4.2
|
19.7
|
1.0
|
N
|
A:ASN134
|
4.2
|
21.1
|
1.0
|
O
|
A:HOH404
|
4.2
|
38.2
|
1.0
|
CB
|
A:HIS191
|
4.3
|
26.3
|
1.0
|
CB
|
A:PRO190
|
4.3
|
20.9
|
1.0
|
C
|
A:HIS133
|
4.3
|
20.5
|
1.0
|
OD1
|
A:ASN134
|
4.4
|
26.5
|
1.0
|
CB
|
A:ASP194
|
4.7
|
16.4
|
1.0
|
CB
|
A:ARG135
|
4.7
|
21.4
|
1.0
|
CA
|
A:PRO190
|
4.7
|
18.9
|
1.0
|
N
|
A:ARG135
|
4.7
|
20.4
|
1.0
|
N
|
A:HIS133
|
4.7
|
17.2
|
1.0
|
C
|
A:HIS191
|
4.9
|
19.9
|
1.0
|
C
|
A:PHE132
|
4.9
|
18.8
|
1.0
|
OD2
|
A:ASP194
|
4.9
|
20.7
|
1.0
|
NE2
|
A:HIS191
|
4.9
|
34.6
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 3e82
Go back to
Chlorine Binding Sites List in 3e82
Chlorine binding site 2 out
of 4 in the Crystal Structure of A Putative Oxidoreductase From Klebsiella Pneumoniae
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of A Putative Oxidoreductase From Klebsiella Pneumoniae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl2
b:29.5
occ:1.00
|
O
|
B:HOH425
|
3.0
|
25.0
|
1.0
|
ND1
|
B:HIS133
|
3.1
|
19.3
|
1.0
|
NZ
|
B:LYS106
|
3.1
|
25.6
|
1.0
|
CB
|
B:HIS191
|
3.4
|
21.3
|
1.0
|
CA
|
B:HIS191
|
3.4
|
19.1
|
1.0
|
CE
|
B:LYS106
|
3.5
|
22.9
|
1.0
|
CA
|
B:HIS133
|
3.6
|
19.1
|
1.0
|
N
|
B:HIS191
|
3.7
|
17.8
|
1.0
|
CD
|
B:LYS106
|
3.8
|
24.8
|
1.0
|
CG
|
B:ARG135
|
3.9
|
23.7
|
1.0
|
CG
|
B:HIS133
|
4.0
|
19.8
|
1.0
|
CB
|
B:HIS133
|
4.0
|
17.2
|
1.0
|
CE1
|
B:HIS133
|
4.1
|
20.6
|
1.0
|
C
|
B:PRO190
|
4.2
|
17.9
|
1.0
|
N
|
B:ASN134
|
4.2
|
19.1
|
1.0
|
C
|
B:HIS133
|
4.2
|
18.1
|
1.0
|
O
|
B:PRO190
|
4.3
|
18.9
|
1.0
|
OD1
|
B:ASN134
|
4.4
|
24.5
|
1.0
|
O
|
B:HOH383
|
4.4
|
18.4
|
1.0
|
O
|
B:HOH452
|
4.4
|
35.0
|
1.0
|
O
|
B:PHE132
|
4.5
|
18.1
|
1.0
|
CB
|
B:ARG135
|
4.6
|
21.5
|
1.0
|
N
|
B:ARG135
|
4.6
|
20.3
|
1.0
|
O
|
B:HOH413
|
4.6
|
35.0
|
1.0
|
CB
|
B:ASP194
|
4.7
|
16.7
|
1.0
|
CB
|
B:PRO190
|
4.7
|
18.8
|
1.0
|
C
|
B:HIS191
|
4.8
|
18.9
|
1.0
|
CG
|
B:HIS191
|
4.8
|
23.2
|
1.0
|
N
|
B:HIS133
|
4.8
|
17.4
|
1.0
|
OD2
|
B:ASP194
|
4.9
|
17.4
|
1.0
|
CG
|
B:LYS106
|
4.9
|
23.2
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 3e82
Go back to
Chlorine Binding Sites List in 3e82
Chlorine binding site 3 out
of 4 in the Crystal Structure of A Putative Oxidoreductase From Klebsiella Pneumoniae
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of A Putative Oxidoreductase From Klebsiella Pneumoniae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl3
b:37.3
occ:1.00
|
O
|
D:HOH392
|
2.9
|
27.5
|
1.0
|
ND1
|
D:HIS133
|
3.1
|
30.1
|
1.0
|
CB
|
D:HIS191
|
3.4
|
21.5
|
1.0
|
CA
|
D:HIS191
|
3.4
|
21.2
|
1.0
|
NZ
|
D:LYS106
|
3.5
|
34.1
|
1.0
|
CE
|
D:LYS106
|
3.6
|
32.4
|
1.0
|
CA
|
D:HIS133
|
3.6
|
24.8
|
1.0
|
CD
|
D:LYS106
|
3.7
|
31.9
|
1.0
|
N
|
D:HIS191
|
3.8
|
20.4
|
1.0
|
CG
|
D:ARG135
|
3.8
|
30.2
|
1.0
|
CG
|
D:HIS133
|
3.9
|
29.3
|
1.0
|
CB
|
D:HIS133
|
3.9
|
27.3
|
1.0
|
CE1
|
D:HIS133
|
4.0
|
31.6
|
1.0
|
C
|
D:HIS133
|
4.1
|
25.0
|
1.0
|
N
|
D:ASN134
|
4.1
|
25.0
|
1.0
|
C
|
D:PRO190
|
4.3
|
21.0
|
1.0
|
O
|
D:HOH395
|
4.3
|
35.0
|
1.0
|
CB
|
D:ARG135
|
4.3
|
27.0
|
1.0
|
OD1
|
D:ASN134
|
4.4
|
23.2
|
1.0
|
N
|
D:ARG135
|
4.4
|
24.5
|
1.0
|
O
|
D:PHE132
|
4.5
|
25.6
|
1.0
|
O
|
D:PRO190
|
4.5
|
19.5
|
1.0
|
CB
|
D:ASP194
|
4.5
|
23.7
|
1.0
|
O
|
D:HOH379
|
4.7
|
20.2
|
1.0
|
OD2
|
D:ASP194
|
4.7
|
21.8
|
1.0
|
N
|
D:HIS133
|
4.8
|
24.7
|
1.0
|
CG
|
D:HIS191
|
4.8
|
23.1
|
1.0
|
C
|
D:HIS191
|
4.8
|
20.6
|
1.0
|
CB
|
D:PRO190
|
4.8
|
23.3
|
1.0
|
CG
|
D:LYS106
|
4.9
|
33.3
|
1.0
|
CG
|
D:ASP194
|
4.9
|
26.2
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 3e82
Go back to
Chlorine Binding Sites List in 3e82
Chlorine binding site 4 out
of 4 in the Crystal Structure of A Putative Oxidoreductase From Klebsiella Pneumoniae
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of A Putative Oxidoreductase From Klebsiella Pneumoniae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl4
b:36.4
occ:1.00
|
O
|
E:HOH427
|
2.8
|
33.7
|
1.0
|
ND1
|
E:HIS133
|
3.2
|
21.4
|
1.0
|
CB
|
E:HIS191
|
3.2
|
25.1
|
1.0
|
CA
|
E:HIS191
|
3.4
|
22.2
|
1.0
|
NZ
|
E:LYS106
|
3.5
|
30.8
|
1.0
|
CA
|
E:HIS133
|
3.6
|
20.9
|
1.0
|
CE
|
E:LYS106
|
3.6
|
29.5
|
1.0
|
CG
|
E:ARG135
|
3.8
|
31.1
|
1.0
|
CD
|
E:LYS106
|
3.8
|
29.5
|
1.0
|
N
|
E:HIS191
|
3.8
|
22.4
|
1.0
|
CB
|
E:HIS133
|
4.0
|
21.7
|
1.0
|
CG
|
E:HIS133
|
4.0
|
23.4
|
1.0
|
C
|
E:HIS133
|
4.1
|
22.7
|
1.0
|
N
|
E:ASN134
|
4.1
|
22.8
|
1.0
|
CE1
|
E:HIS133
|
4.1
|
22.9
|
1.0
|
OD1
|
E:ASN134
|
4.1
|
30.3
|
1.0
|
CB
|
E:ARG135
|
4.3
|
26.4
|
1.0
|
O
|
E:PHE132
|
4.3
|
20.9
|
1.0
|
N
|
E:ARG135
|
4.3
|
25.6
|
1.0
|
C
|
E:PRO190
|
4.4
|
22.2
|
1.0
|
CG
|
E:HIS191
|
4.6
|
26.9
|
1.0
|
O
|
E:PRO190
|
4.6
|
22.5
|
1.0
|
O
|
E:HOH416
|
4.6
|
23.3
|
1.0
|
CB
|
E:ASP194
|
4.7
|
17.4
|
1.0
|
C
|
E:HIS191
|
4.7
|
20.7
|
1.0
|
OD2
|
E:ASP194
|
4.7
|
18.9
|
1.0
|
N
|
E:HIS133
|
4.8
|
20.6
|
1.0
|
O
|
E:HIS133
|
5.0
|
23.1
|
1.0
|
CG
|
E:LYS106
|
5.0
|
30.5
|
1.0
|
O
|
E:HIS191
|
5.0
|
19.9
|
1.0
|
CA
|
E:ARG135
|
5.0
|
25.0
|
1.0
|
C
|
E:PHE132
|
5.0
|
21.1
|
1.0
|
|
Reference:
S.Eswaramoorthy,
M.B.Mohammad,
C.A.Thomas,
A.C.Brown,
S.K.Burley,
S.Swaminathan.
Crystal Structure of A Putative Oxidoreductase From Klebsiella Pneumoniae To Be Published.
Page generated: Sat Jul 20 18:42:45 2024
|