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Chlorine in PDB 3e9z: Crystal Structure of Purine Nucleoside Phosphorylase From Schistosoma Mansoni in Complex with 6-Chloroguanine

Enzymatic activity of Crystal Structure of Purine Nucleoside Phosphorylase From Schistosoma Mansoni in Complex with 6-Chloroguanine

All present enzymatic activity of Crystal Structure of Purine Nucleoside Phosphorylase From Schistosoma Mansoni in Complex with 6-Chloroguanine:
2.4.2.1;

Protein crystallography data

The structure of Crystal Structure of Purine Nucleoside Phosphorylase From Schistosoma Mansoni in Complex with 6-Chloroguanine, PDB code: 3e9z was solved by H.M.Pereira, M.M.Rezende, G.Oliva, R.C.Garratt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.63 / 2.31
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.821, 118.121, 129.055, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 24.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Purine Nucleoside Phosphorylase From Schistosoma Mansoni in Complex with 6-Chloroguanine (pdb code 3e9z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Purine Nucleoside Phosphorylase From Schistosoma Mansoni in Complex with 6-Chloroguanine, PDB code: 3e9z:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3e9z

Go back to Chlorine Binding Sites List in 3e9z
Chlorine binding site 1 out of 2 in the Crystal Structure of Purine Nucleoside Phosphorylase From Schistosoma Mansoni in Complex with 6-Chloroguanine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Purine Nucleoside Phosphorylase From Schistosoma Mansoni in Complex with 6-Chloroguanine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl704

b:0.3
occ:1.00
CL6 A:6GU704 0.0 0.3 1.0
C6 A:6GU704 1.8 25.0 1.0
O A:HOH739 2.4 12.7 1.0
OD1 A:ASN245 2.5 28.5 1.0
N1 A:6GU704 2.8 31.4 1.0
C5 A:6GU704 2.8 34.7 1.0
CA A:GLY120 3.0 18.1 1.0
CG A:ASN245 3.3 30.4 1.0
N7 A:6GU704 3.4 25.8 1.0
ND2 A:ASN245 3.4 22.5 1.0
OE1 A:GLU203 3.5 17.8 1.0
N A:GLY120 3.5 17.4 1.0
OG A:SER247 4.0 18.7 1.0
CD2 A:TYR202 4.2 23.1 1.0
C2 A:6GU704 4.2 31.0 1.0
C4 A:6GU704 4.2 32.9 1.0
C A:GLY120 4.2 19.7 1.0
CG1 A:VAL219 4.3 15.6 1.0
CE2 A:TYR202 4.5 23.6 1.0
C A:ALA119 4.6 20.5 1.0
O A:VAL219 4.6 18.5 1.0
CD A:GLU203 4.6 20.0 1.0
O A:HOH738 4.7 15.9 1.0
N3 A:6GU704 4.8 34.8 1.0
O A:HOH744 4.8 23.4 1.0
CB A:ASN245 4.8 18.6 1.0
O A:ASN245 4.8 18.2 1.0
C8 A:6GU704 4.8 30.9 1.0
O A:GLY120 4.9 22.2 1.0
CB A:SER247 4.9 18.1 1.0
CA A:SER247 4.9 17.8 1.0
N A:GLY121 4.9 20.3 1.0

Chlorine binding site 2 out of 2 in 3e9z

Go back to Chlorine Binding Sites List in 3e9z
Chlorine binding site 2 out of 2 in the Crystal Structure of Purine Nucleoside Phosphorylase From Schistosoma Mansoni in Complex with 6-Chloroguanine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Purine Nucleoside Phosphorylase From Schistosoma Mansoni in Complex with 6-Chloroguanine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl704

b:46.9
occ:1.00
CL6 C:6GU704 0.0 46.9 1.0
C6 C:6GU704 1.8 26.4 1.0
O C:HOH806 2.7 15.8 1.0
N1 C:6GU704 2.7 23.2 1.0
OD1 C:ASN245 2.8 30.5 1.0
C5 C:6GU704 2.9 24.2 1.0
OE1 C:GLU203 3.3 22.1 1.0
CA C:GLY120 3.4 18.4 1.0
N7 C:6GU704 3.4 22.6 1.0
ND2 C:ASN245 3.5 29.9 1.0
CG C:ASN245 3.5 26.1 1.0
CD2 C:TYR202 3.7 28.3 1.0
N C:GLY120 3.7 18.6 1.0
CE2 C:TYR202 4.0 26.3 1.0
C2 C:6GU704 4.1 22.1 1.0
C4 C:6GU704 4.2 27.6 1.0
CG1 C:VAL219 4.4 16.0 1.0
CD C:GLU203 4.4 25.1 1.0
O C:HOH763 4.5 21.3 1.0
O C:VAL219 4.6 22.2 1.0
OG C:SER247 4.6 16.4 1.0
C C:ALA119 4.7 19.5 1.0
N3 C:6GU704 4.7 38.9 1.0
O C:HOH805 4.7 16.9 1.0
C C:GLY120 4.7 23.3 1.0
CG C:TYR202 4.7 24.5 1.0
OE2 C:GLU203 4.8 13.8 1.0
C8 C:6GU704 4.9 29.7 1.0
CB C:PRO257 4.9 26.1 1.0
CB C:ASN245 5.0 20.4 1.0

Reference:

H.M.Pereira, M.M.Rezende, G.Oliva, R.C.Garratt. Crystal Structure of Schistosoma Mansoni Purine Nucleoside Phosphorylase (Smpnp) in Complex with Adenine, 8-Aminoguanine, 8-Azaguanine and 6-Chloroguanine. To Be Published.
Page generated: Sat Jul 20 18:44:18 2024

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