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Chlorine in PDB 3eee: Probing the Function of Heme Distortion in the H-Nox Family

Protein crystallography data

The structure of Probing the Function of Heme Distortion in the H-Nox Family, PDB code: 3eee was solved by C.Olea Jr, E.M.Boon, P.Pellicena, J.Kuriyan, M.A.Marletta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.67 / 2.12
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 116.253, 124.686, 83.555, 90.00, 126.58, 90.00
R / Rfree (%) 20.5 / 25.2

Other elements in 3eee:

The structure of Probing the Function of Heme Distortion in the H-Nox Family also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Probing the Function of Heme Distortion in the H-Nox Family (pdb code 3eee). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Probing the Function of Heme Distortion in the H-Nox Family, PDB code: 3eee:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3eee

Go back to Chlorine Binding Sites List in 3eee
Chlorine binding site 1 out of 2 in the Probing the Function of Heme Distortion in the H-Nox Family


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Probing the Function of Heme Distortion in the H-Nox Family within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl495

b:59.7
occ:1.00
CA B:GLY164 3.6 49.9 1.0
CG B:ARG163 3.8 46.5 1.0
N B:GLY164 3.9 52.0 1.0
CD B:ARG163 3.9 46.1 1.0
C B:GLY164 4.0 48.4 1.0
C B:ARG163 4.1 53.2 1.0
O B:ARG163 4.2 52.0 1.0
N B:GLU165 4.2 48.9 1.0
CG B:GLU165 4.4 65.9 1.0
CB B:ARG163 4.6 45.4 1.0
OE1 B:GLU165 4.6 86.4 1.0
O B:GLY164 4.6 51.1 1.0
CB B:GLU165 4.9 62.8 1.0

Chlorine binding site 2 out of 2 in 3eee

Go back to Chlorine Binding Sites List in 3eee
Chlorine binding site 2 out of 2 in the Probing the Function of Heme Distortion in the H-Nox Family


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Probing the Function of Heme Distortion in the H-Nox Family within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl496

b:68.5
occ:1.00
CA A:GLY164 3.6 49.3 1.0
CA C:GLY164 3.7 51.1 1.0
CG C:ARG163 3.8 63.1 1.0
N A:GLY164 3.8 49.9 1.0
CG A:ARG163 3.8 52.7 1.0
C C:GLY164 3.9 56.2 1.0
CD C:ARG163 4.0 70.0 1.0
N C:GLY164 4.0 52.7 1.0
O C:ARG163 4.0 50.4 1.0
C A:ARG163 4.1 56.1 1.0
CD A:ARG163 4.1 57.0 1.0
O A:ARG163 4.1 56.7 1.0
C C:ARG163 4.1 51.5 1.0
N C:GLU165 4.1 52.5 1.0
C A:GLY164 4.3 49.8 1.0
O C:GLY164 4.4 59.6 1.0
CG C:GLU165 4.4 75.1 1.0
N A:GLU165 4.5 54.5 1.0
CB C:ARG163 4.5 55.3 1.0
CB C:GLU165 4.6 71.8 1.0
CB A:ARG163 4.6 49.9 1.0
OH A:TYR138 4.7 50.2 1.0
CE1 A:TYR138 4.9 49.9 1.0
OE1 C:GLU165 5.0 88.3 1.0
CA C:GLU165 5.0 60.9 1.0
CA C:ARG163 5.0 51.8 1.0

Reference:

C.Olea, E.M.Boon, P.Pellicena, J.Kuriyan, M.A.Marletta. Probing the Function of Heme Distortion in the H-Nox Family. Acs Chem.Biol. V. 3 703 2008.
ISSN: ISSN 1554-8929
PubMed: 19032091
DOI: 10.1021/CB800185H
Page generated: Sat Jul 20 18:48:48 2024

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