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Chlorine in PDB 3efp: Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form

Protein crystallography data

The structure of Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form, PDB code: 3efp was solved by C.M.Stevens, M.Paetzel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.75 / 2.01
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 128.020, 128.020, 78.723, 90.00, 90.00, 120.00
R / Rfree (%) 17.8 / 21.3

Other elements in 3efp:

The structure of Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form (pdb code 3efp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form, PDB code: 3efp:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 3efp

Go back to Chlorine Binding Sites List in 3efp
Chlorine binding site 1 out of 6 in the Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl211

b:61.2
occ:1.00
O A:HOH872 3.0 37.5 1.0
O A:GLY100 3.6 17.9 1.0
C A:GLY100 3.8 18.8 1.0
O A:PHE99 3.9 18.0 1.0
N A:ASP101 4.0 18.9 1.0
CA A:ASP101 4.0 19.1 1.0
O A:HOH739 4.1 22.7 1.0
CD2 A:LEU104 4.4 18.6 1.0
CB A:LEU104 4.5 18.4 1.0
O A:HOH884 4.5 36.2 1.0
CA A:GLY100 4.5 18.5 1.0
CB A:ASP101 4.6 18.9 1.0
C A:PHE99 4.9 17.9 1.0

Chlorine binding site 2 out of 6 in 3efp

Go back to Chlorine Binding Sites List in 3efp
Chlorine binding site 2 out of 6 in the Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl212

b:73.7
occ:1.00
O A:HOH696 3.4 48.4 1.0
OG1 A:THR38 3.7 21.3 1.0
CE1 A:HIS68 3.7 20.0 1.0
CB A:THR38 4.1 22.1 1.0
CG2 A:THR38 4.1 21.9 1.0
ND1 A:HIS68 4.4 20.8 1.0
CG1 A:VAL34 4.6 20.0 1.0
NE2 A:HIS68 4.8 19.0 1.0
O A:HOH730 4.9 32.3 1.0
O A:HOH725 5.0 28.5 1.0

Chlorine binding site 3 out of 6 in 3efp

Go back to Chlorine Binding Sites List in 3efp
Chlorine binding site 3 out of 6 in the Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl213

b:68.5
occ:1.00
OG1 A:THR145 3.4 20.1 1.0
N A:THR145 3.7 19.4 1.0
CB A:THR145 3.7 19.1 1.0
OE1 A:GLU146 3.8 26.8 1.0
N A:GLN144 3.9 20.3 1.0
CG A:GLN144 3.9 21.0 1.0
O A:GLY142 4.2 19.6 1.0
C A:ARG143 4.2 20.1 1.0
CA A:ARG143 4.2 20.4 1.0
CA A:THR145 4.3 19.6 1.0
C A:GLN144 4.6 19.5 1.0
CA A:GLN144 4.6 19.9 1.0
CB A:GLN144 4.9 20.4 1.0
CD A:GLN144 4.9 22.8 1.0

Chlorine binding site 4 out of 6 in 3efp

Go back to Chlorine Binding Sites List in 3efp
Chlorine binding site 4 out of 6 in the Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl209

b:58.1
occ:1.00
O B:HOH683 2.6 20.5 1.0
O B:HOH720 2.7 34.6 1.0
CD B:ARG143 3.7 20.1 1.0
CB B:ASN141 4.2 17.5 1.0
CG B:ARG143 4.2 16.9 1.0
NH1 B:ARG143 4.4 19.9 1.0
O B:ASN141 4.4 16.1 1.0
ND2 B:ASN141 4.5 16.2 1.0
NE B:ARG143 4.5 20.5 1.0
CG B:ASN141 4.7 16.9 1.0
CZ B:ARG143 4.8 21.2 1.0

Chlorine binding site 5 out of 6 in 3efp

Go back to Chlorine Binding Sites List in 3efp
Chlorine binding site 5 out of 6 in the Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl210

b:70.8
occ:1.00
O B:HOH735 3.1 25.7 1.0
O B:HOH855 3.9 47.1 1.0
O B:HOH769 4.0 31.1 1.0
O B:HOH804 4.2 36.1 1.0
CE1 B:PHE117 4.2 18.6 1.0
CZ B:PHE117 4.4 18.8 1.0
CB B:LEU133 4.6 17.9 1.0
CD2 B:LEU133 4.7 15.5 1.0
SD B:MET119 4.8 25.9 1.0
CD1 B:LEU133 4.9 17.4 1.0
CG B:LEU133 5.0 17.8 1.0

Chlorine binding site 6 out of 6 in 3efp

Go back to Chlorine Binding Sites List in 3efp
Chlorine binding site 6 out of 6 in the Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of the Escherichia Coli Twin Arginine Leader Peptide Binding Protein Dmsd in A Monomeric Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl211

b:54.7
occ:1.00
O B:HOH802 2.7 37.5 1.0
O B:HOH829 2.8 30.6 1.0
OE1 B:GLN6 2.8 17.0 1.0
O B:HOH801 2.9 29.2 1.0
O B:ALA139 3.2 17.9 1.0
CD B:GLN6 3.6 18.8 1.0
O B:HOH805 3.7 37.3 1.0
NE2 B:GLN6 4.0 18.2 1.0
C B:ALA139 4.2 17.6 1.0
CA B:GLN6 4.3 18.2 1.0
CA B:GLU140 4.3 18.1 1.0
O B:GLU140 4.4 17.6 1.0
O B:HOH685 4.4 17.1 1.0
CB B:GLN6 4.6 18.1 1.0
C B:GLU140 4.6 17.6 1.0
N B:GLU140 4.6 17.6 1.0
O B:SER5 4.7 18.6 1.0
CG B:GLN6 4.7 18.6 1.0
O B:GLN6 4.7 18.9 1.0
C B:GLN6 4.8 18.5 1.0

Reference:

C.M.Stevens, T.M.Winstone, R.J.Turner, M.Paetzel. Structural Analysis of A Monomeric Form of the Twin-Arginine Leader Peptide Binding Chaperone Escherichia Coli Dmsd. J.Mol.Biol. V. 389 124 2009.
ISSN: ISSN 0022-2836
PubMed: 19361518
DOI: 10.1016/J.JMB.2009.03.069
Page generated: Sat Dec 12 09:40:10 2020

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