Atomistry » Chlorine » PDB 3ec8-3erp » 3eo8
Atomistry »
  Chlorine »
    PDB 3ec8-3erp »
      3eo8 »

Chlorine in PDB 3eo8: Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution

Protein crystallography data

The structure of Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution, PDB code: 3eo8 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.34 / 1.74
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.843, 183.265, 74.393, 90.00, 104.89, 90.00
R / Rfree (%) 15.6 / 19.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution (pdb code 3eo8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution, PDB code: 3eo8:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 3eo8

Go back to Chlorine Binding Sites List in 3eo8
Chlorine binding site 1 out of 6 in the Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:22.8
occ:1.00
 OG1 B:THR163 2.9 26.7 1.0
O A:HOH675 2.9 39.6 1.0
OG A:SER113 2.9 31.9 1.0
N A:SER113 3.1 29.1 1.0
CB A:SER113 3.5 29.8 1.0
O A:HOH781 3.6 15.4 1.0
C B:THR163 3.6 24.5 1.0
N B:SER164 3.6 25.1 1.0
O B:THR163 3.7 24.8 1.0
CB A:PRO112 3.7 26.8 1.0
CA B:SER164 3.7 24.9 1.0
CB B:THR163 3.9 25.6 1.0
CA A:SER113 3.9 28.9 1.0
CA A:PRO112 4.0 27.0 1.0
C A:PRO112 4.1 27.6 1.0
OH A:TYR110 4.1 30.7 1.0
CA B:THR163 4.2 24.8 1.0
CB B:SER164 4.4 25.2 1.0
CE2 A:TYR110 4.4 30.1 1.0
CG A:PRO136 4.6 27.0 1.0
O A:SER113 4.6 28.4 1.0
CB A:PRO136 4.7 25.2 1.0
N B:THR163 4.7 25.8 1.0
N5 B:FMN500 4.7 25.2 1.0
CZ A:TYR110 4.7 30.1 1.0
C A:SER113 4.8 28.7 1.0
O4 B:FMN500 4.9 25.7 1.0
CH3 A:ACT501 4.9 22.8 1.0
C B:SER164 5.0 25.3 1.0

Chlorine binding site 2 out of 6 in 3eo8

Go back to Chlorine Binding Sites List in 3eo8
Chlorine binding site 2 out of 6 in the Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl503

b:21.0
occ:1.00
 O B:HOH564 2.6 36.6 1.0
OG B:SER113 2.9 29.7 1.0
OG1 A:THR163 3.0 24.7 1.0
N B:SER113 3.1 28.1 1.0
CB B:SER113 3.5 27.9 1.0
O A:HOH783 3.6 14.5 1.0
C A:THR163 3.6 23.8 1.0
N A:SER164 3.6 23.2 1.0
CB B:PRO112 3.6 28.7 1.0
CA A:SER164 3.7 23.2 1.0
O A:THR163 3.8 25.3 1.0
CA B:SER113 3.9 27.9 1.0
OH B:TYR110 3.9 29.6 1.0
CB A:THR163 3.9 24.8 1.0
C B:PRO112 4.1 28.4 1.0
CA B:PRO112 4.1 28.5 1.0
CB A:SER164 4.2 24.1 1.0
CA A:THR163 4.3 24.3 1.0
CE2 B:TYR110 4.3 28.8 1.0
CG B:PRO136 4.6 26.1 1.0
CZ B:TYR110 4.6 28.6 1.0
CH3 B:ACT501 4.6 25.9 1.0
CB B:PRO136 4.7 25.9 1.0
O B:SER113 4.7 27.6 1.0
N A:THR163 4.7 25.1 1.0
N5 A:FMN500 4.8 26.9 1.0
C B:SER113 4.8 27.7 1.0
O4 A:FMN500 4.9 26.2 1.0
CG B:PRO112 4.9 27.2 1.0
C A:SER164 5.0 23.4 1.0

Chlorine binding site 3 out of 6 in 3eo8

Go back to Chlorine Binding Sites List in 3eo8
Chlorine binding site 3 out of 6 in the Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl502

b:19.3
occ:1.00
 O C:HOH754 2.7 40.8 1.0
OG1 D:THR163 3.0 24.7 1.0
OG C:SER113 3.1 27.8 0.5
N C:SER113 3.2 27.1 1.0
CB C:SER113 3.5 27.7 0.5
CB C:SER113 3.6 27.6 0.5
C D:THR163 3.6 23.8 1.0
OH C:TYR110 3.6 27.7 1.0
N D:SER164 3.7 24.0 1.0
O D:THR163 3.7 23.5 1.0
CA D:SER164 3.8 24.4 1.0
CB C:PRO112 3.8 28.1 1.0
O C:HOH781 3.8 14.7 1.0
CB D:THR163 3.9 24.1 1.0
CA C:SER113 4.0 27.2 0.5
CA C:SER113 4.0 27.3 0.5
CA C:PRO112 4.0 28.0 1.0
C C:PRO112 4.1 27.9 1.0
CE2 C:TYR110 4.1 25.9 1.0
CA D:THR163 4.3 23.8 1.0
CZ C:TYR110 4.3 28.5 1.0
NZ C:LYS40 4.3 37.3 1.0
CB D:SER164 4.4 24.6 1.0
CH3 C:ACT501 4.5 26.0 1.0
CG C:PRO136 4.7 25.1 1.0
N D:THR163 4.7 24.4 1.0
CB C:PRO136 4.8 24.7 1.0
N5 D:FMN500 4.8 27.8 1.0
O4 D:FMN500 4.9 24.8 1.0
O C:SER113 4.9 27.4 1.0
OG C:SER113 4.9 27.1 0.5
C C:SER113 5.0 27.1 1.0

Chlorine binding site 4 out of 6 in 3eo8

Go back to Chlorine Binding Sites List in 3eo8
Chlorine binding site 4 out of 6 in the Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl503

b:19.2
occ:1.00
 O D:HOH572 3.0 31.2 1.0
OG1 C:THR163 3.0 27.8 1.0
OG D:SER113 3.1 26.4 0.5
N D:SER113 3.2 28.0 1.0
CB D:SER113 3.4 28.3 0.5
CB D:SER113 3.4 27.9 0.5
N C:SER164 3.6 24.1 1.0
C C:THR163 3.6 24.9 1.0
CA C:SER164 3.7 24.5 1.0
O C:THR163 3.7 23.4 1.0
O D:HOH797 3.8 17.5 1.0
OH D:TYR110 3.9 30.1 1.0
CB D:PRO112 3.9 28.6 1.0
CB C:THR163 3.9 25.1 1.0
CA D:SER113 3.9 28.1 0.5
CA D:SER113 3.9 27.7 0.5
CA D:PRO112 4.2 28.4 1.0
C D:PRO112 4.2 28.2 1.0
CE2 D:TYR110 4.2 27.6 1.0
CA C:THR163 4.2 24.9 1.0
CB C:SER164 4.2 25.1 1.0
CZ D:TYR110 4.5 29.7 1.0
OG D:SER113 4.6 29.2 0.5
CH3 D:ACT501 4.6 23.8 1.0
NZ D:LYS40 4.6 39.7 1.0
CG D:PRO136 4.7 24.8 1.0
N5 C:FMN500 4.7 25.7 1.0
N C:THR163 4.7 25.5 1.0
CB D:PRO136 4.7 25.4 1.0
O D:SER113 4.7 28.4 1.0
O4 C:FMN500 4.8 24.9 1.0
C D:SER113 4.9 27.9 1.0
C C:SER164 4.9 24.4 1.0

Chlorine binding site 5 out of 6 in 3eo8

Go back to Chlorine Binding Sites List in 3eo8
Chlorine binding site 5 out of 6 in the Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl504

b:22.8
occ:1.00
 O E:HOH1913 2.7 34.1 1.0
OG E:SER113 2.8 30.5 1.0
OG1 F:THR163 2.9 26.1 1.0
N E:SER113 3.1 28.7 1.0
CB E:SER113 3.5 29.2 1.0
C F:THR163 3.6 24.2 1.0
O E:HOH1933 3.6 13.4 1.0
N F:SER164 3.6 25.0 1.0
O F:THR163 3.7 25.5 1.0
CA F:SER164 3.7 24.6 1.0
CB E:PRO112 3.8 26.6 1.0
CA E:SER113 3.9 28.9 1.0
CB F:THR163 3.9 23.7 1.0
C E:PRO112 4.1 27.4 1.0
CA E:PRO112 4.1 27.3 1.0
OH E:TYR110 4.1 29.4 1.0
CA F:THR163 4.2 24.2 1.0
CB F:SER164 4.3 24.6 1.0
CE2 E:TYR110 4.4 26.9 1.0
O E:SER113 4.6 29.2 1.0
CG E:PRO136 4.7 25.1 1.0
N5 F:FMN500 4.7 24.9 1.0
N F:THR163 4.7 24.8 1.0
C E:SER113 4.7 29.4 1.0
CZ E:TYR110 4.7 26.9 1.0
CB E:PRO136 4.7 24.0 1.0
CH3 E:ACT501 4.8 21.2 1.0
O4 F:FMN500 4.9 26.9 1.0

Chlorine binding site 6 out of 6 in 3eo8

Go back to Chlorine Binding Sites List in 3eo8
Chlorine binding site 6 out of 6 in the Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl503

b:20.5
occ:1.00
 OG1 E:THR163 2.9 26.2 1.0
OG F:SER113 2.9 30.4 1.0
O F:HOH1075 2.9 37.0 1.0
N F:SER113 3.1 28.9 1.0
CB F:SER113 3.5 28.9 1.0
C E:THR163 3.6 24.3 1.0
O E:HOH1948 3.6 15.0 1.0
O E:THR163 3.7 23.8 1.0
CB F:PRO112 3.7 29.3 1.0
N E:SER164 3.7 23.6 1.0
CA E:SER164 3.8 23.9 1.0
OH F:TYR110 3.9 31.1 1.0
CB E:THR163 3.9 24.9 1.0
CA F:SER113 3.9 28.6 1.0
CA F:PRO112 4.0 28.9 1.0
C F:PRO112 4.1 29.3 1.0
CA E:THR163 4.2 24.1 1.0
CE2 F:TYR110 4.3 29.7 1.0
CB E:SER164 4.3 25.0 1.0
CZ F:TYR110 4.6 28.6 1.0
CG F:PRO136 4.6 25.4 1.0
CB F:PRO136 4.6 25.6 1.0
CH3 F:ACT501 4.7 25.0 1.0
N E:THR163 4.7 24.6 1.0
O F:SER113 4.8 27.2 1.0
N5 E:FMN500 4.8 27.6 1.0
C F:SER113 4.9 27.9 1.0
O4 E:FMN500 4.9 27.3 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Jul 20 18:54:04 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy