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Chlorine in PDB 3eo8: Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution

Protein crystallography data

The structure of Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution, PDB code: 3eo8 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.34 / 1.74
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.843, 183.265, 74.393, 90.00, 104.89, 90.00
R / Rfree (%) 15.6 / 19.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution (pdb code 3eo8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution, PDB code: 3eo8:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 3eo8

Go back to Chlorine Binding Sites List in 3eo8
Chlorine binding site 1 out of 6 in the Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:22.8
occ:1.00
 OG1 B:THR163 2.9 26.7 1.0
O A:HOH675 2.9 39.6 1.0
OG A:SER113 2.9 31.9 1.0
N A:SER113 3.1 29.1 1.0
CB A:SER113 3.5 29.8 1.0
O A:HOH781 3.6 15.4 1.0
C B:THR163 3.6 24.5 1.0
N B:SER164 3.6 25.1 1.0
O B:THR163 3.7 24.8 1.0
CB A:PRO112 3.7 26.8 1.0
CA B:SER164 3.7 24.9 1.0
CB B:THR163 3.9 25.6 1.0
CA A:SER113 3.9 28.9 1.0
CA A:PRO112 4.0 27.0 1.0
C A:PRO112 4.1 27.6 1.0
OH A:TYR110 4.1 30.7 1.0
CA B:THR163 4.2 24.8 1.0
CB B:SER164 4.4 25.2 1.0
CE2 A:TYR110 4.4 30.1 1.0
CG A:PRO136 4.6 27.0 1.0
O A:SER113 4.6 28.4 1.0
CB A:PRO136 4.7 25.2 1.0
N B:THR163 4.7 25.8 1.0
N5 B:FMN500 4.7 25.2 1.0
CZ A:TYR110 4.7 30.1 1.0
C A:SER113 4.8 28.7 1.0
O4 B:FMN500 4.9 25.7 1.0
CH3 A:ACT501 4.9 22.8 1.0
C B:SER164 5.0 25.3 1.0

Chlorine binding site 2 out of 6 in 3eo8

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Chlorine binding site 2 out of 6 in the Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl503

b:21.0
occ:1.00
 O B:HOH564 2.6 36.6 1.0
OG B:SER113 2.9 29.7 1.0
OG1 A:THR163 3.0 24.7 1.0
N B:SER113 3.1 28.1 1.0
CB B:SER113 3.5 27.9 1.0
O A:HOH783 3.6 14.5 1.0
C A:THR163 3.6 23.8 1.0
N A:SER164 3.6 23.2 1.0
CB B:PRO112 3.6 28.7 1.0
CA A:SER164 3.7 23.2 1.0
O A:THR163 3.8 25.3 1.0
CA B:SER113 3.9 27.9 1.0
OH B:TYR110 3.9 29.6 1.0
CB A:THR163 3.9 24.8 1.0
C B:PRO112 4.1 28.4 1.0
CA B:PRO112 4.1 28.5 1.0
CB A:SER164 4.2 24.1 1.0
CA A:THR163 4.3 24.3 1.0
CE2 B:TYR110 4.3 28.8 1.0
CG B:PRO136 4.6 26.1 1.0
CZ B:TYR110 4.6 28.6 1.0
CH3 B:ACT501 4.6 25.9 1.0
CB B:PRO136 4.7 25.9 1.0
O B:SER113 4.7 27.6 1.0
N A:THR163 4.7 25.1 1.0
N5 A:FMN500 4.8 26.9 1.0
C B:SER113 4.8 27.7 1.0
O4 A:FMN500 4.9 26.2 1.0
CG B:PRO112 4.9 27.2 1.0
C A:SER164 5.0 23.4 1.0

Chlorine binding site 3 out of 6 in 3eo8

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Chlorine binding site 3 out of 6 in the Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl502

b:19.3
occ:1.00
 O C:HOH754 2.7 40.8 1.0
OG1 D:THR163 3.0 24.7 1.0
OG C:SER113 3.1 27.8 0.5
N C:SER113 3.2 27.1 1.0
CB C:SER113 3.5 27.7 0.5
CB C:SER113 3.6 27.6 0.5
C D:THR163 3.6 23.8 1.0
OH C:TYR110 3.6 27.7 1.0
N D:SER164 3.7 24.0 1.0
O D:THR163 3.7 23.5 1.0
CA D:SER164 3.8 24.4 1.0
CB C:PRO112 3.8 28.1 1.0
O C:HOH781 3.8 14.7 1.0
CB D:THR163 3.9 24.1 1.0
CA C:SER113 4.0 27.2 0.5
CA C:SER113 4.0 27.3 0.5
CA C:PRO112 4.0 28.0 1.0
C C:PRO112 4.1 27.9 1.0
CE2 C:TYR110 4.1 25.9 1.0
CA D:THR163 4.3 23.8 1.0
CZ C:TYR110 4.3 28.5 1.0
NZ C:LYS40 4.3 37.3 1.0
CB D:SER164 4.4 24.6 1.0
CH3 C:ACT501 4.5 26.0 1.0
CG C:PRO136 4.7 25.1 1.0
N D:THR163 4.7 24.4 1.0
CB C:PRO136 4.8 24.7 1.0
N5 D:FMN500 4.8 27.8 1.0
O4 D:FMN500 4.9 24.8 1.0
O C:SER113 4.9 27.4 1.0
OG C:SER113 4.9 27.1 0.5
C C:SER113 5.0 27.1 1.0

Chlorine binding site 4 out of 6 in 3eo8

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Chlorine binding site 4 out of 6 in the Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl503

b:19.2
occ:1.00
 O D:HOH572 3.0 31.2 1.0
OG1 C:THR163 3.0 27.8 1.0
OG D:SER113 3.1 26.4 0.5
N D:SER113 3.2 28.0 1.0
CB D:SER113 3.4 28.3 0.5
CB D:SER113 3.4 27.9 0.5
N C:SER164 3.6 24.1 1.0
C C:THR163 3.6 24.9 1.0
CA C:SER164 3.7 24.5 1.0
O C:THR163 3.7 23.4 1.0
O D:HOH797 3.8 17.5 1.0
OH D:TYR110 3.9 30.1 1.0
CB D:PRO112 3.9 28.6 1.0
CB C:THR163 3.9 25.1 1.0
CA D:SER113 3.9 28.1 0.5
CA D:SER113 3.9 27.7 0.5
CA D:PRO112 4.2 28.4 1.0
C D:PRO112 4.2 28.2 1.0
CE2 D:TYR110 4.2 27.6 1.0
CA C:THR163 4.2 24.9 1.0
CB C:SER164 4.2 25.1 1.0
CZ D:TYR110 4.5 29.7 1.0
OG D:SER113 4.6 29.2 0.5
CH3 D:ACT501 4.6 23.8 1.0
NZ D:LYS40 4.6 39.7 1.0
CG D:PRO136 4.7 24.8 1.0
N5 C:FMN500 4.7 25.7 1.0
N C:THR163 4.7 25.5 1.0
CB D:PRO136 4.7 25.4 1.0
O D:SER113 4.7 28.4 1.0
O4 C:FMN500 4.8 24.9 1.0
C D:SER113 4.9 27.9 1.0
C C:SER164 4.9 24.4 1.0

Chlorine binding site 5 out of 6 in 3eo8

Go back to Chlorine Binding Sites List in 3eo8
Chlorine binding site 5 out of 6 in the Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl504

b:22.8
occ:1.00
 O E:HOH1913 2.7 34.1 1.0
OG E:SER113 2.8 30.5 1.0
OG1 F:THR163 2.9 26.1 1.0
N E:SER113 3.1 28.7 1.0
CB E:SER113 3.5 29.2 1.0
C F:THR163 3.6 24.2 1.0
O E:HOH1933 3.6 13.4 1.0
N F:SER164 3.6 25.0 1.0
O F:THR163 3.7 25.5 1.0
CA F:SER164 3.7 24.6 1.0
CB E:PRO112 3.8 26.6 1.0
CA E:SER113 3.9 28.9 1.0
CB F:THR163 3.9 23.7 1.0
C E:PRO112 4.1 27.4 1.0
CA E:PRO112 4.1 27.3 1.0
OH E:TYR110 4.1 29.4 1.0
CA F:THR163 4.2 24.2 1.0
CB F:SER164 4.3 24.6 1.0
CE2 E:TYR110 4.4 26.9 1.0
O E:SER113 4.6 29.2 1.0
CG E:PRO136 4.7 25.1 1.0
N5 F:FMN500 4.7 24.9 1.0
N F:THR163 4.7 24.8 1.0
C E:SER113 4.7 29.4 1.0
CZ E:TYR110 4.7 26.9 1.0
CB E:PRO136 4.7 24.0 1.0
CH3 E:ACT501 4.8 21.2 1.0
O4 F:FMN500 4.9 26.9 1.0

Chlorine binding site 6 out of 6 in 3eo8

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Chlorine binding site 6 out of 6 in the Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Blub-Like Flavoprotein (YP_001089088.1) From Clostridium Difficile 630 at 1.74 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl503

b:20.5
occ:1.00
 OG1 E:THR163 2.9 26.2 1.0
OG F:SER113 2.9 30.4 1.0
O F:HOH1075 2.9 37.0 1.0
N F:SER113 3.1 28.9 1.0
CB F:SER113 3.5 28.9 1.0
C E:THR163 3.6 24.3 1.0
O E:HOH1948 3.6 15.0 1.0
O E:THR163 3.7 23.8 1.0
CB F:PRO112 3.7 29.3 1.0
N E:SER164 3.7 23.6 1.0
CA E:SER164 3.8 23.9 1.0
OH F:TYR110 3.9 31.1 1.0
CB E:THR163 3.9 24.9 1.0
CA F:SER113 3.9 28.6 1.0
CA F:PRO112 4.0 28.9 1.0
C F:PRO112 4.1 29.3 1.0
CA E:THR163 4.2 24.1 1.0
CE2 F:TYR110 4.3 29.7 1.0
CB E:SER164 4.3 25.0 1.0
CZ F:TYR110 4.6 28.6 1.0
CG F:PRO136 4.6 25.4 1.0
CB F:PRO136 4.6 25.6 1.0
CH3 F:ACT501 4.7 25.0 1.0
N E:THR163 4.7 24.6 1.0
O F:SER113 4.8 27.2 1.0
N5 E:FMN500 4.8 27.6 1.0
C F:SER113 4.9 27.9 1.0
O4 E:FMN500 4.9 27.3 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Jul 20 18:54:04 2024

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