Atomistry » Chlorine » PDB 3es1-3f5r » 3f1y
Atomistry »
  Chlorine »
    PDB 3es1-3f5r »
      3f1y »

Chlorine in PDB 3f1y: Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus

Enzymatic activity of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus

All present enzymatic activity of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus:
2.4.1.217;

Protein crystallography data

The structure of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus, PDB code: 3f1y was solved by S.Macedo-Ribeiro, P.J.B.Pereira, N.Empadinhas, M.S.Da Costa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.39 / 2.20
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 108.881, 108.881, 311.651, 90.00, 90.00, 120.00
R / Rfree (%) 18.8 / 21.8

Other elements in 3f1y:

The structure of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus (pdb code 3f1y). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus, PDB code: 3f1y:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3f1y

Go back to Chlorine Binding Sites List in 3f1y
Chlorine binding site 1 out of 4 in the Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl337

b:51.3
occ:1.00
 NH1 A:ARG273 3.1 42.9 1.0
N A:LEU322 3.3 57.8 1.0
NH2 A:ARG273 3.3 42.1 1.0
O A:HOH408 3.4 54.2 1.0
O A:HOH421 3.5 50.1 1.0
CG A:GLU321 3.7 80.0 1.0
CZ A:ARG273 3.7 41.9 1.0
CB A:SER301 3.8 44.4 1.0
CA A:GLU321 3.9 78.1 1.0
CB A:LEU322 4.1 55.5 1.0
C A:GLU321 4.1 76.3 1.0
CA A:LEU322 4.2 56.4 1.0
N A:SER301 4.3 42.5 1.0
CA A:SER301 4.3 42.9 1.0
CB A:GLU321 4.4 79.7 1.0
OG A:SER301 4.7 46.4 1.0
O A:LEU322 4.8 56.8 1.0
O A:GLU320 4.8 71.1 1.0
C A:LEU322 4.9 56.8 1.0
CD A:GLU321 4.9 81.6 1.0
CB A:LEU300 4.9 43.9 1.0
NE A:ARG273 5.0 40.9 1.0

Chlorine binding site 2 out of 4 in 3f1y

Go back to Chlorine Binding Sites List in 3f1y
Chlorine binding site 2 out of 4 in the Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl338

b:46.3
occ:1.00
 CD A:ARG277 3.1 39.5 1.0
O A:HOH504 3.1 40.2 1.0
NH2 A:ARG280 3.3 47.2 0.9
NH1 A:ARG277 3.4 40.9 1.0
NH2 A:ARG273 3.4 42.1 1.0
O A:HOH415 3.9 53.8 1.0
NE A:ARG277 3.9 39.3 1.0
CD1 A:LEU300 4.0 42.8 1.0
CZ A:ARG277 4.1 40.0 1.0
CB A:ARG277 4.1 37.6 1.0
CG A:ARG277 4.2 38.7 1.0
CA A:ARG277 4.5 38.0 1.0
CZ A:ARG273 4.5 41.9 1.0
CZ A:ARG280 4.5 47.8 0.9
CD2 A:LEU322 4.6 53.7 1.0
NE A:ARG273 4.7 40.9 1.0
NE A:ARG280 4.9 47.2 0.9
N A:ARG277 5.0 37.3 1.0
O A:ARG273 5.0 37.5 1.0

Chlorine binding site 3 out of 4 in 3f1y

Go back to Chlorine Binding Sites List in 3f1y
Chlorine binding site 3 out of 4 in the Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl337

b:57.7
occ:1.00
 NH2 C:ARG280 2.7 54.6 1.0
O C:HOH353 3.2 41.4 1.0
NH1 C:ARG277 3.2 47.6 1.0
NH2 C:ARG273 3.4 46.5 1.0
CB C:ARG277 3.8 42.4 1.0
CG C:ARG277 3.9 43.4 1.0
CD C:ARG277 4.0 43.6 1.0
CZ C:ARG280 4.0 55.6 1.0
CD1 C:LEU300 4.1 46.7 1.0
CA C:ARG277 4.3 42.5 1.0
CD2 C:LEU322 4.4 44.8 1.0
CZ C:ARG277 4.4 46.9 1.0
CZ C:ARG273 4.5 46.0 1.0
O C:HOH367 4.6 68.6 1.0
NE C:ARG277 4.7 44.9 1.0
NE C:ARG280 4.7 55.3 1.0
NE C:ARG273 4.7 44.5 1.0
N C:ARG277 4.9 41.7 1.0
NH1 C:ARG280 5.0 57.1 1.0

Chlorine binding site 4 out of 4 in 3f1y

Go back to Chlorine Binding Sites List in 3f1y
Chlorine binding site 4 out of 4 in the Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl338

b:50.2
occ:1.00
 NH1 C:ARG273 3.2 47.3 1.0
N C:LEU322 3.3 49.9 1.0
O C:HOH363 3.4 51.1 1.0
NH2 C:ARG273 3.5 46.5 1.0
CB C:SER301 3.8 46.7 1.0
CZ C:ARG273 3.8 46.0 1.0
CA C:GLU321 3.9 59.2 1.0
C C:GLU321 4.1 57.3 1.0
CG C:GLU321 4.1 60.9 1.0
O C:LEU322 4.1 49.5 1.0
CA C:LEU322 4.2 48.3 1.0
CB C:LEU322 4.2 47.1 1.0
CA C:SER301 4.3 45.2 1.0
N C:SER301 4.4 44.8 1.0
O C:GLU320 4.5 64.5 1.0
CB C:GLU321 4.5 60.9 1.0
C C:LEU322 4.6 48.7 1.0
O C:HOH537 4.7 69.2 1.0
OG C:SER301 4.7 48.5 1.0

Reference:

N.Empadinhas, P.J.B.Pereira, L.Albuquerque, J.Costa, B.Sa-Moura, A.T.Marques, S.Macedo-Ribeiro, M.S.Da Costa. Functional and Structural Characterization of A Novel Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus Reveals Its Dual Substrate Specificity Mol.Microbiol. V. 79 76 2011.
ISSN: ISSN 0950-382X
PubMed: 21166895
DOI: 10.1111/J.1365-2958.2010.07432.X
Page generated: Sat Dec 12 09:41:01 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy