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Chlorine in PDB 3faj: Structure of the Structural Protein P131 of the Archaeal Virus Acidianus Two-Tailed Virus (Atv)

Protein crystallography data

The structure of Structure of the Structural Protein P131 of the Archaeal Virus Acidianus Two-Tailed Virus (Atv), PDB code: 3faj was solved by A.Goulet, G.Vestergaard, U.Scheele, V.Campanacci, R.A.Garrett, C.Cambillau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.99 / 1.70
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 62.450, 62.450, 57.220, 90.00, 90.00, 120.00
R / Rfree (%) 17.4 / 19.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the Structural Protein P131 of the Archaeal Virus Acidianus Two-Tailed Virus (Atv) (pdb code 3faj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of the Structural Protein P131 of the Archaeal Virus Acidianus Two-Tailed Virus (Atv), PDB code: 3faj:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3faj

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Chlorine binding site 1 out of 3 in the Structure of the Structural Protein P131 of the Archaeal Virus Acidianus Two-Tailed Virus (Atv)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Structural Protein P131 of the Archaeal Virus Acidianus Two-Tailed Virus (Atv) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl132

b:16.9
occ:1.00
OG1 A:THR51 3.0 22.8 1.0
NE A:ARG110 3.1 32.0 1.0
N A:THR51 3.3 23.3 1.0
NH2 A:ARG110 3.4 29.7 1.0
C A:ASP48 3.7 23.8 1.0
OD1 A:ASN111 3.7 27.4 1.0
CB A:THR51 3.7 23.3 1.0
CB A:ASP48 3.7 23.6 1.0
CZ A:ARG110 3.7 32.9 1.0
CA A:ASP48 3.7 23.7 1.0
N A:ARG50 3.8 23.5 1.0
O A:HOH257 3.8 22.7 1.0
CB A:ARG50 3.9 23.4 0.5
O A:ASP48 4.0 23.6 1.0
CB A:ARG50 4.0 23.2 0.5
N A:GLU49 4.1 24.1 1.0
CA A:THR51 4.1 23.5 1.0
CA A:ARG50 4.1 23.5 0.5
CA A:ARG50 4.2 23.3 0.5
C A:ARG50 4.2 23.3 1.0
CD A:ARG110 4.2 30.1 1.0
CG A:ARG110 4.4 27.6 1.0
CG A:ASP48 4.6 25.8 1.0
O A:HOH192 4.6 39.5 1.0
OD1 A:ASP48 4.6 27.0 1.0
C A:GLU49 4.7 23.6 1.0
CG2 A:THR107 4.7 22.7 1.0
CG A:ASN111 4.7 24.1 1.0
CG A:ARG50 4.7 24.6 0.5
CB A:ARG110 4.8 25.6 1.0
NH1 A:ARG110 5.0 33.4 1.0

Chlorine binding site 2 out of 3 in 3faj

Go back to Chlorine Binding Sites List in 3faj
Chlorine binding site 2 out of 3 in the Structure of the Structural Protein P131 of the Archaeal Virus Acidianus Two-Tailed Virus (Atv)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Structural Protein P131 of the Archaeal Virus Acidianus Two-Tailed Virus (Atv) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl133

b:28.7
occ:1.00
O A:HOH184 3.1 20.6 1.0
ND2 A:ASN92 3.2 30.1 1.0
NE2 A:GLN88 3.6 32.8 0.8
CG A:GLN88 3.6 27.7 0.8
O A:GLN88 3.9 24.6 1.0
CB A:ASN92 3.9 23.8 1.0
CA A:VAL89 3.9 24.9 1.0
CG A:ASN92 4.1 28.0 1.0
C A:GLN88 4.1 24.6 1.0
CD A:GLN88 4.1 32.0 0.8
N A:VAL89 4.1 24.3 1.0
CG2 A:VAL89 4.2 24.6 1.0
O A:HOH202 4.5 27.7 1.0
CB A:VAL89 4.6 24.8 1.0
CB A:GLN88 4.7 24.4 0.8
O A:MET61 4.7 25.2 1.0
CB A:MET61 4.8 26.5 1.0
O A:HOH205 4.8 32.1 1.0
O A:HOH191 4.8 32.4 1.0
CB A:ALA65 4.8 25.3 1.0
O A:VAL89 4.9 25.0 1.0
O A:HOH256 4.9 38.6 1.0
C A:VAL89 4.9 25.4 1.0
CA A:GLN88 5.0 24.4 1.0

Chlorine binding site 3 out of 3 in 3faj

Go back to Chlorine Binding Sites List in 3faj
Chlorine binding site 3 out of 3 in the Structure of the Structural Protein P131 of the Archaeal Virus Acidianus Two-Tailed Virus (Atv)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the Structural Protein P131 of the Archaeal Virus Acidianus Two-Tailed Virus (Atv) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl134

b:33.2
occ:1.00
O A:HOH250 2.8 34.8 1.0
NZ A:LYS52 3.4 30.9 1.0
CA A:GLU49 3.6 24.1 1.0
CB A:GLU49 3.6 24.8 1.0
CG A:GLU49 3.8 25.8 1.0
CE A:LYS52 3.9 27.7 1.0
CD A:LYS52 4.0 24.9 1.0
O A:ARG44 4.0 25.1 1.0
N A:GLU49 4.1 24.1 1.0
CA A:ARG44 4.1 24.9 0.5
CA A:ARG44 4.1 24.8 0.5
CA A:GLY47 4.2 24.2 1.0
C A:GLY47 4.3 24.3 1.0
CG A:ARG44 4.4 25.4 0.5
CD A:GLU49 4.5 26.4 1.0
C A:ARG44 4.6 24.8 1.0
C A:ASP48 4.6 23.8 1.0
CG A:ARG44 4.6 25.0 0.5
O A:GLY47 4.7 24.2 1.0
N A:ASP48 4.7 22.9 1.0
OE1 A:GLU49 4.7 29.7 1.0
CB A:ARG44 4.8 24.7 0.5
CB A:ARG44 4.8 24.7 0.5
O A:ALA43 4.8 23.7 1.0
C A:GLU49 4.8 23.6 1.0
N A:GLY47 4.9 24.4 1.0
O A:ASP48 4.9 23.6 1.0
CB A:LYS52 4.9 23.5 1.0
O A:HOH139 5.0 20.9 1.0

Reference:

A.Goulet, G.Vestergaard, U.Scheele, V.Campanacci, R.A.Garrett, C.Cambillau. Structure of the Structural Protein P131 of the Archaeal Virus Acidianus Two-Tailed Virus (Atv) To Be Published.
Page generated: Sat Jul 20 19:15:40 2024

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