Chlorine in PDB 3fbz: Crystal Structure of ORF140 of the Archaeal Virus Acidianus Filamentous Virus 1 (AFV1)

The structure of Crystal Structure of ORF140 of the Archaeal Virus Acidianus Filamentous Virus 1 (AFV1), PDB code: 3fbz was solved by A.Goulet, D.Prangishvili, H.Van Tilbeurgh, V.Campanacci, C.Cambillau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	58.158, 81.150, 119.898, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 25.5

The binding sites of Chlorine atom in the Crystal Structure of ORF140 of the Archaeal Virus Acidianus Filamentous Virus 1 (AFV1) (pdb code 3fbz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of ORF140 of the Archaeal Virus Acidianus Filamentous Virus 1 (AFV1), PDB code: 3fbz:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of ORF140 of the Archaeal Virus Acidianus Filamentous Virus 1 (AFV1)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of ORF140 of the Archaeal Virus Acidianus Filamentous Virus 1 (AFV1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl144 b:44.4 occ:1.00 O B:ARG15 2.6 36.7 1.0 NZ B:LYS19 2.8 38.7 1.0 N B:LYS19 3.1 30.4 1.0 CB B:THR18 3.1 33.2 1.0 NH1 B:ARG15 3.2 45.6 1.0 CG B:LYS19 3.5 29.5 1.0 CA B:THR18 3.6 33.0 1.0 N B:THR18 3.7 33.5 1.0 C B:THR18 3.7 31.8 1.0 C B:ARG15 3.7 36.7 1.0 CE B:LYS19 3.8 35.5 1.0 CZ B:ARG15 3.8 45.2 1.0 CB B:LYS19 3.9 29.4 1.0 CG2 B:THR18 4.0 32.4 1.0 O B:TYR16 4.0 35.1 1.0 OG1 B:THR18 4.0 34.6 1.0 O B:HOH424 4.0 9.2 1.0 CA B:LYS19 4.1 28.8 1.0 C B:TYR16 4.1 35.3 1.0 CG B:ARG15 4.2 38.9 1.0 CD B:LYS19 4.2 32.8 1.0 CA B:TYR16 4.2 35.4 1.0 NH2 B:ARG15 4.2 44.5 1.0 N B:TYR16 4.4 35.9 1.0 NE B:ARG15 4.5 43.1 1.0 C B:LYS17 4.7 34.3 1.0 N B:LYS17 4.7 35.1 1.0 O B:HOH152 4.8 23.8 1.0 CA B:ARG15 4.8 37.3 1.0 CD B:ARG15 4.9 41.9 1.0 O B:THR18 4.9 32.5 1.0 CB B:ARG15 4.9 37.1 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of ORF140 of the Archaeal Virus Acidianus Filamentous Virus 1 (AFV1)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of ORF140 of the Archaeal Virus Acidianus Filamentous Virus 1 (AFV1) within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl142 b:19.0 occ:1.00 O B:HOH149 3.2 12.4 1.0 O C:HOH307 3.2 10.3 1.0 OH D:TYR16 3.2 29.4 0.7 N D:LYS19 3.2 25.1 1.0 CE1 D:TYR16 3.8 26.8 0.7 CA D:THR18 3.8 28.2 1.0 CZ D:TYR16 3.9 27.8 0.7 CE D:LYS19 3.9 25.3 1.0 CB D:LYS19 4.0 24.2 1.0 C D:THR18 4.0 26.7 1.0 CG D:LEU20 4.1 22.6 1.0 CD2 D:LEU20 4.1 20.5 1.0 CA D:LYS19 4.1 24.1 1.0 OG1 D:THR18 4.3 31.9 1.0 N D:LEU20 4.3 23.0 1.0 NZ D:LYS19 4.4 25.0 1.0 O D:LYS17 4.5 30.9 1.0 CG2 C:THR71 4.6 20.2 1.0 C D:LYS19 4.6 23.6 1.0 CG D:LYS19 4.6 23.3 1.0 CB D:THR18 4.6 28.6 1.0 O B:GLU72 4.7 20.0 1.0 CD D:LYS19 4.8 24.1 1.0 CD1 D:LEU20 4.8 20.9 1.0 CB C:THR71 4.8 19.4 1.0 OG1 C:THR71 4.8 18.5 1.0 N D:THR18 4.8 29.2 1.0 O B:HOH373 4.9 17.4 1.0 CD1 D:TYR16 5.0 26.9 0.7

A.Goulet, S.Blangy, P.Redder, D.Prangishvili, C.Felisberto-Rodrigues, P.Forterre, V.Campanacci, C.Cambillau. Acidianus Filamentous Virus 1 Coat Proteins Display A Helical Fold Spanning the Filamentous Archaeal Viruses Lineage. Proc.Natl.Acad.Sci.Usa V. 106 21155 2009.
ISSN: ISSN 0027-8424
PubMed: 19934032
DOI: 10.1073/PNAS.0909893106