Atomistry » Chlorine » PDB 3fee-3fpi » 3fg3
Atomistry »
  Chlorine »
    PDB 3fee-3fpi »
      3fg3 »

Chlorine in PDB 3fg3: Crystal Structure of DELTA413-417:Gs I805W Lox

Enzymatic activity of Crystal Structure of DELTA413-417:Gs I805W Lox

All present enzymatic activity of Crystal Structure of DELTA413-417:Gs I805W Lox:
1.13.11.40;

Protein crystallography data

The structure of Crystal Structure of DELTA413-417:Gs I805W Lox, PDB code: 3fg3 was solved by D.B.Neau, M.E.Newcomer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.54 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 103.704, 170.214, 104.202, 90.00, 96.13, 90.00
R / Rfree (%) 16.2 / 20.6

Other elements in 3fg3:

The structure of Crystal Structure of DELTA413-417:Gs I805W Lox also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Calcium (Ca) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of DELTA413-417:Gs I805W Lox (pdb code 3fg3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of DELTA413-417:Gs I805W Lox, PDB code: 3fg3:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 3fg3

Go back to Chlorine Binding Sites List in 3fg3
Chlorine binding site 1 out of 6 in the Crystal Structure of DELTA413-417:Gs I805W Lox


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of DELTA413-417:Gs I805W Lox within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl2401

b:26.1
occ:1.00
 O A:HOH1352 3.0 43.8 1.0
N A:ALA490 3.2 19.5 1.0
N A:GLU1019 3.2 22.4 1.0
N A:ASP1020 3.2 22.7 1.0
CE3 A:TRP1018 3.7 20.6 1.0
CB A:ASP1020 3.7 23.7 1.0
CB A:ALA490 3.7 20.1 1.0
CA A:GLU489 3.7 23.1 1.0
C A:GLU489 3.9 21.6 1.0
CA A:GLU1019 4.0 24.6 1.0
CA A:TRP1018 4.0 22.0 1.0
CA A:ALA490 4.0 20.8 1.0
CB A:GLU1019 4.1 26.1 1.0
C A:TRP1018 4.1 22.9 1.0
C A:GLU1019 4.1 24.2 1.0
CA A:ASP1020 4.1 23.8 1.0
CD A:LYS784 4.1 22.0 1.0
CE A:LYS784 4.2 25.5 1.0
CB A:GLU489 4.3 23.1 1.0
CZ A:PHE882 4.3 22.0 1.0
CZ3 A:TRP1018 4.4 21.9 1.0
CB A:TRP1018 4.6 21.3 1.0
O A:ALA1017 4.6 25.1 1.0
CE2 A:PHE882 4.7 21.7 1.0
CG A:GLU489 4.7 26.0 1.0
CD2 A:TRP1018 4.7 18.7 1.0
O A:GLY488 4.9 21.0 1.0
CG A:GLU1019 4.9 28.4 1.0
N A:GLU489 5.0 21.2 1.0

Chlorine binding site 2 out of 6 in 3fg3

Go back to Chlorine Binding Sites List in 3fg3
Chlorine binding site 2 out of 6 in the Crystal Structure of DELTA413-417:Gs I805W Lox


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of DELTA413-417:Gs I805W Lox within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl2402

b:44.9
occ:1.00
 O A:HOH262 3.1 23.4 1.0
N A:ASP406 3.2 21.3 1.0
N A:PHE431 3.2 25.1 1.0
CA A:THR405 3.5 20.2 1.0
CA A:GLY430 3.5 25.8 1.0
O A:HOH1698 3.5 37.2 1.0
CB A:THR405 3.7 21.4 1.0
O A:HOH2040 3.8 39.2 1.0
C A:THR405 3.8 21.4 1.0
O A:HOH2070 3.9 32.1 1.0
CB A:PHE431 3.9 24.2 1.0
C A:GLY430 3.9 26.8 1.0
CA A:PHE431 4.2 25.2 1.0
CB A:ASP406 4.3 23.0 1.0
CA A:ASP406 4.3 22.7 1.0
CG2 A:THR405 4.4 21.0 1.0
CD2 A:LEU408 4.4 30.1 1.0
O A:HOH2078 4.8 32.9 1.0
N A:THR405 4.8 19.2 1.0
O A:ARG404 4.9 21.6 1.0
OG1 A:THR405 4.9 19.7 1.0
N A:GLY430 4.9 24.8 1.0

Chlorine binding site 3 out of 6 in 3fg3

Go back to Chlorine Binding Sites List in 3fg3
Chlorine binding site 3 out of 6 in the Crystal Structure of DELTA413-417:Gs I805W Lox


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of DELTA413-417:Gs I805W Lox within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl2401

b:28.4
occ:1.00
 N B:ALA490 3.1 22.5 1.0
O B:HOH2387 3.1 38.2 1.0
N B:GLU1019 3.1 26.6 1.0
N B:ASP1020 3.2 21.9 1.0
CB B:ALA490 3.6 23.3 1.0
CE3 B:TRP1018 3.6 22.1 1.0
CB B:ASP1020 3.7 22.2 1.0
CA B:GLU489 3.8 26.2 1.0
C B:GLU489 3.9 24.1 1.0
CD B:LYS784 3.9 24.6 1.0
CA B:TRP1018 3.9 25.0 1.0
CA B:GLU1019 3.9 25.6 1.0
CA B:ALA490 4.0 22.4 1.0
C B:TRP1018 4.0 26.2 1.0
CE B:LYS784 4.0 28.0 1.0
C B:GLU1019 4.0 24.5 1.0
CA B:ASP1020 4.1 22.6 1.0
CB B:GLU1019 4.1 27.2 1.0
CZ3 B:TRP1018 4.3 20.0 1.0
CB B:GLU489 4.3 29.5 1.0
CZ B:PHE882 4.4 21.5 1.0
CB B:TRP1018 4.6 24.7 1.0
CD2 B:TRP1018 4.6 21.9 1.0
O B:ALA1017 4.7 24.2 1.0
CG B:GLU489 4.8 33.5 1.0
CE2 B:PHE882 4.8 26.6 1.0
O B:GLY488 4.8 27.0 1.0
N B:GLU489 5.0 27.2 1.0

Chlorine binding site 4 out of 6 in 3fg3

Go back to Chlorine Binding Sites List in 3fg3
Chlorine binding site 4 out of 6 in the Crystal Structure of DELTA413-417:Gs I805W Lox


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of DELTA413-417:Gs I805W Lox within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl2401

b:24.0
occ:1.00
 N C:PHE431 3.1 23.1 1.0
N C:ASP406 3.1 20.1 1.0
CA C:GLY430 3.7 23.7 1.0
CA C:THR405 3.7 19.4 1.0
CB C:PHE431 3.8 22.1 1.0
CB C:THR405 3.8 21.1 1.0
C C:GLY430 3.9 23.1 1.0
C C:THR405 3.9 20.0 1.0
CB C:ASP406 4.0 21.6 1.0
CD2 C:LEU408 4.1 24.8 1.0
CG C:ASP406 4.1 26.6 1.0
CA C:PHE431 4.1 22.1 1.0
CA C:ASP406 4.1 20.7 1.0
OD2 C:ASP406 4.3 30.5 1.0
OD1 C:ASP406 4.5 25.1 1.0
CG2 C:THR405 4.5 17.9 1.0
O C:HOH1229 4.6 38.9 1.0
O C:ASP406 4.8 23.4 1.0
OG1 C:THR405 4.9 19.2 1.0
C C:ASP406 4.9 21.2 1.0

Chlorine binding site 5 out of 6 in 3fg3

Go back to Chlorine Binding Sites List in 3fg3
Chlorine binding site 5 out of 6 in the Crystal Structure of DELTA413-417:Gs I805W Lox


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of DELTA413-417:Gs I805W Lox within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl2402

b:38.5
occ:1.00
 OD1 C:ASP1020 2.1 28.0 0.5
CG C:ASP1020 3.1 27.7 0.5
N C:GLU1019 3.1 28.5 1.0
N C:ASP1020 3.1 26.4 1.0
O C:HOH2462 3.3 44.1 1.0
N C:ALA490 3.3 24.1 1.0
CE3 C:TRP1018 3.6 24.6 1.0
CB C:ASP1020 3.7 26.2 0.5
CB C:ASP1020 3.7 25.7 0.5
CB C:ALA490 3.8 21.8 1.0
CA C:GLU489 3.9 30.2 1.0
CA C:GLU1019 3.9 29.5 1.0
CD C:LYS784 3.9 20.0 1.0
CA C:TRP1018 3.9 25.8 1.0
C C:TRP1018 4.0 28.6 1.0
CE C:LYS784 4.0 25.4 1.0
C C:GLU1019 4.0 28.6 1.0
CA C:ASP1020 4.0 26.2 0.5
OD2 C:ASP1020 4.0 29.8 0.5
CA C:ASP1020 4.0 26.3 0.5
C C:GLU489 4.1 27.9 1.0
CA C:ALA490 4.2 21.7 1.0
CZ3 C:TRP1018 4.2 22.4 1.0
CB C:GLU1019 4.3 31.5 1.0
CB C:GLU489 4.4 32.3 1.0
O C:ALA1017 4.5 28.8 1.0
CD2 C:TRP1018 4.6 23.3 1.0
CB C:TRP1018 4.6 25.5 1.0
CZ C:PHE882 4.6 23.5 1.0
O C:GLY488 4.7 32.2 1.0

Chlorine binding site 6 out of 6 in 3fg3

Go back to Chlorine Binding Sites List in 3fg3
Chlorine binding site 6 out of 6 in the Crystal Structure of DELTA413-417:Gs I805W Lox


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of DELTA413-417:Gs I805W Lox within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl2401

b:28.4
occ:1.00
 N D:ALA490 3.1 23.9 1.0
N D:ASP1020 3.2 27.0 1.0
N D:GLU1019 3.2 26.5 1.0
CE3 D:TRP1018 3.6 21.9 1.0
CB D:ASP1020 3.7 25.3 1.0
CB D:ALA490 3.7 23.3 1.0
CA D:GLU489 3.8 27.2 1.0
C D:GLU489 3.9 25.8 1.0
CA D:TRP1018 4.0 24.4 1.0
CA D:GLU1019 4.0 28.6 1.0
CB D:GLU1019 4.0 29.0 1.0
CA D:ALA490 4.0 22.9 1.0
CA D:ASP1020 4.1 26.9 1.0
C D:GLU1019 4.1 28.2 1.0
CD D:LYS784 4.1 22.2 1.0
C D:TRP1018 4.1 26.8 1.0
CE D:LYS784 4.2 28.9 1.0
CZ3 D:TRP1018 4.2 20.1 1.0
CB D:GLU489 4.3 29.5 1.0
CZ D:PHE882 4.5 19.8 1.0
O D:ALA1017 4.6 25.5 1.0
CB D:TRP1018 4.6 23.9 1.0
CG D:GLU489 4.6 33.7 1.0
CD2 D:TRP1018 4.7 19.1 1.0
CG D:GLU1019 4.8 35.2 1.0
CE2 D:PHE882 4.8 21.9 1.0
NZ D:LYS784 4.9 31.2 1.0
O D:GLY488 4.9 29.6 1.0
N D:GLU489 5.0 27.9 1.0

Reference:

D.B.Neau, N.C.Gilbert, S.G.Bartlett, W.Boeglin, A.R.Brash, M.E.Newcomer. The 1.85 A Structure of An 8R-Lipoxygenase Suggests A General Model For Lipoxygenase Product Specificity. Biochemistry V. 48 7906 2009.
ISSN: ISSN 0006-2960
PubMed: 19594169
DOI: 10.1021/BI900084M
Page generated: Sat Jul 20 19:23:19 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy