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Chlorine in PDB 3fj1: Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution

Protein crystallography data

The structure of Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution, PDB code: 3fj1 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.39 / 1.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.400, 114.141, 197.279, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 19.5

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution (pdb code 3fj1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution, PDB code: 3fj1:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 11 in 3fj1

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Chlorine binding site 1 out of 11 in the Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl344

b:20.1
occ:1.00
 O A:HOH622 3.0 28.6 1.0
OG A:SER98 3.1 11.4 1.0
O A:HOH352 3.1 9.3 1.0
NH1 A:ARG50 3.4 23.2 1.0
O A:HOH533 3.4 24.2 1.0
O A:HOH365 3.5 18.0 1.0
CG A:ARG50 3.7 16.2 1.0
CB A:SER98 3.8 12.0 1.0
CD A:ARG50 3.8 18.9 1.0
CB A:SER103 3.9 16.4 1.0
CA A:SER98 4.3 11.7 1.0
CG1 A:ILE106 4.3 10.7 1.0
CZ A:ARG50 4.4 22.2 1.0
NE A:ARG50 4.6 20.1 1.0
OG A:SER103 4.7 17.2 1.0
N A:SER103 4.9 15.6 1.0
N A:GLN99 4.9 14.3 1.0
O A:HOH415 4.9 27.5 1.0
C A:SER98 5.0 13.3 1.0

Chlorine binding site 2 out of 11 in 3fj1

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Chlorine binding site 2 out of 11 in the Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl345

b:13.6
occ:1.00
 OG A:SER238 2.9 11.2 1.0
O B:HOH437 3.1 14.9 1.0
O A:HOH558 3.1 15.7 1.0
NH1 A:ARG212 3.3 12.3 1.0
N A:GLY213 3.4 8.9 1.0
CB A:SER238 3.6 10.4 1.0
CD A:ARG212 3.7 11.5 1.0
CD2 A:LEU216 3.8 10.2 1.0
CA A:ARG212 3.9 10.0 1.0
C A:ARG212 4.1 9.5 1.0
OG B:SER78 4.2 10.4 1.0
OH A:TYR62 4.3 12.7 1.0
CZ A:ARG212 4.4 12.4 1.0
O A:HOH672 4.4 22.0 1.0
CA A:GLY213 4.4 9.3 1.0
CB B:SER78 4.5 9.2 1.0
O A:GLY211 4.5 9.5 1.0
NE A:ARG212 4.5 11.8 1.0
CA A:SER238 4.5 10.2 1.0
CB A:LEU216 4.7 9.2 1.0
CG A:ARG212 4.7 10.8 1.0
CB A:ARG212 4.7 10.2 1.0
N A:ARG212 4.8 9.7 1.0
CG A:LEU216 4.8 9.9 1.0
O A:GLY213 4.9 9.3 1.0
C A:GLY211 4.9 9.9 1.0

Chlorine binding site 3 out of 11 in 3fj1

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Chlorine binding site 3 out of 11 in the Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl344

b:18.0
occ:1.00
 OG B:SER98 3.1 9.6 1.0
O B:HOH375 3.2 10.0 1.0
O B:HOH570 3.3 20.9 1.0
O B:HOH637 3.3 20.5 1.0
NH1 B:ARG50 3.4 21.3 1.0
O B:HOH403 3.4 15.6 1.0
CG B:ARG50 3.7 14.3 1.0
CB B:SER98 3.8 9.8 1.0
CD B:ARG50 3.9 17.3 1.0
CB B:SER103 4.1 15.2 1.0
CA B:SER98 4.3 9.7 1.0
CG1 B:ILE106 4.4 9.2 1.0
CZ B:ARG50 4.5 20.4 1.0
O B:HOH811 4.6 24.4 1.0
NE B:ARG50 4.7 18.3 1.0
OG B:SER103 4.9 15.7 1.0
N B:GLN99 4.9 11.2 1.0
C B:SER98 5.0 10.8 1.0

Chlorine binding site 4 out of 11 in 3fj1

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Chlorine binding site 4 out of 11 in the Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl345

b:12.8
occ:1.00
 OG B:SER238 3.0 8.2 1.0
O A:HOH450 3.2 13.2 1.0
NH1 B:ARG212 3.2 11.5 1.0
O B:HOH577 3.3 15.0 1.0
N B:GLY213 3.3 9.2 1.0
CB B:SER238 3.6 9.3 1.0
CD B:ARG212 3.7 11.6 1.0
CA B:ARG212 3.9 9.0 1.0
CD2 B:LEU216 3.9 10.7 1.0
C B:ARG212 4.1 9.0 1.0
CZ B:ARG212 4.2 12.0 1.0
OG A:SER78 4.3 10.9 1.0
OH B:TYR62 4.3 12.1 1.0
CA B:GLY213 4.3 8.2 1.0
NE B:ARG212 4.4 12.1 1.0
CB A:SER78 4.4 10.1 1.0
O B:HOH1009 4.4 34.1 1.0
O B:GLY211 4.5 8.6 1.0
CA B:SER238 4.5 9.2 1.0
CG B:ARG212 4.7 10.5 1.0
CB B:LEU216 4.8 9.6 1.0
N B:ARG212 4.8 8.8 1.0
CB B:ARG212 4.8 9.8 1.0
CG B:LEU216 4.9 10.3 1.0
O B:GLY213 4.9 8.1 1.0
C B:GLY211 5.0 8.6 1.0

Chlorine binding site 5 out of 11 in 3fj1

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Chlorine binding site 5 out of 11 in the Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl346

b:27.8
occ:1.00
 O B:HOH465 3.1 12.8 1.0
O B:HOH695 3.1 18.1 1.0
N B:GLU196 3.4 14.1 1.0
CA B:TRP194 3.5 12.1 1.0
C B:TRP194 3.6 12.2 1.0
CB B:GLU196 3.6 18.3 1.0
N B:PRO195 3.8 12.5 1.0
CB B:TRP194 3.9 11.4 1.0
CA B:GLU196 3.9 15.9 1.0
N B:MSE197 4.0 14.6 1.0
CD B:PRO195 4.0 12.7 1.0
O B:TRP194 4.1 12.3 1.0
CD2 B:LEU296 4.1 13.4 1.0
CD1 B:TRP194 4.3 11.4 1.0
CG B:GLU196 4.3 20.9 1.0
C B:PRO195 4.4 12.8 1.0
CG B:TRP194 4.4 11.2 1.0
CG B:PRO195 4.4 12.8 1.0
C B:GLU196 4.5 15.0 1.0
CA B:PRO195 4.6 12.5 1.0
O B:HOH382 4.6 28.7 1.0
N B:TRP194 4.8 11.8 1.0
CE2 B:PHE284 4.8 13.7 1.0
CB B:MSE197 4.9 14.3 0.3
CD B:GLU196 5.0 23.4 1.0

Chlorine binding site 6 out of 11 in 3fj1

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Chlorine binding site 6 out of 11 in the Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl344

b:15.7
occ:1.00
 OG C:SER98 3.1 9.8 1.0
O C:HOH376 3.1 9.5 1.0
O C:HOH475 3.2 14.8 1.0
O C:HOH374 3.3 12.8 1.0
O C:HOH482 3.3 20.7 1.0
NH1 C:ARG50 3.4 12.2 0.5
NH1 C:ARG50 3.5 12.4 0.5
CG C:ARG50 3.6 11.1 0.5
CG C:ARG50 3.6 11.1 0.5
CB C:SER98 3.8 9.5 1.0
CD C:ARG50 3.8 11.4 0.5
CD C:ARG50 3.8 11.4 0.5
CB C:SER103 4.0 16.4 1.0
CA C:SER98 4.2 9.4 1.0
CZ C:ARG50 4.4 12.0 0.5
CZ C:ARG50 4.4 12.0 0.5
NE C:ARG50 4.5 11.6 0.5
CG1 C:ILE106 4.6 10.3 1.0
NE C:ARG50 4.6 11.5 0.5
N C:GLN99 4.7 10.8 1.0
C C:SER98 4.8 10.3 1.0
O C:HOH902 4.8 39.5 1.0
OG C:SER103 4.9 16.9 1.0

Chlorine binding site 7 out of 11 in 3fj1

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Chlorine binding site 7 out of 11 in the Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl345

b:14.1
occ:1.00
 OG C:SER238 3.0 10.4 1.0
O D:HOH410 3.1 12.6 1.0
NH1 C:ARG212 3.2 13.1 1.0
O C:HOH380 3.3 22.2 1.0
N C:GLY213 3.4 10.6 1.0
CB C:SER238 3.7 9.3 1.0
CD C:ARG212 3.7 12.0 1.0
CD2 C:LEU216 3.8 10.2 1.0
CA C:ARG212 3.8 10.3 1.0
C C:ARG212 4.1 10.1 1.0
OH C:TYR62 4.2 12.4 1.0
OG D:SER78 4.2 8.3 1.0
CZ C:ARG212 4.2 12.9 1.0
CA C:GLY213 4.4 10.3 1.0
CB D:SER78 4.4 9.0 1.0
NE C:ARG212 4.4 12.4 1.0
O C:GLY211 4.4 9.3 1.0
CA C:SER238 4.5 10.0 1.0
CB C:LEU216 4.6 9.0 1.0
O C:HOH403 4.7 32.3 1.0
CG C:ARG212 4.7 11.3 1.0
CG C:LEU216 4.8 9.5 1.0
N C:ARG212 4.8 9.8 1.0
CB C:ARG212 4.8 10.4 1.0
O C:GLY213 4.9 9.3 1.0
C C:GLY211 4.9 9.3 1.0

Chlorine binding site 8 out of 11 in 3fj1

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Chlorine binding site 8 out of 11 in the Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl346

b:26.0
occ:1.00
 O C:HOH379 3.0 22.7 1.0
O C:HOH384 3.1 19.9 1.0
N C:GLU196 3.3 16.2 1.0
C C:TRP194 3.5 12.8 1.0
CA C:TRP194 3.5 12.3 1.0
CB C:GLU196 3.5 19.8 1.0
N C:PRO195 3.7 13.7 1.0
CA C:GLU196 3.9 17.8 1.0
CD C:PRO195 3.9 13.7 1.0
CG C:GLU196 3.9 21.7 1.0
O C:TRP194 3.9 13.1 1.0
N C:MSE197 4.0 17.0 1.0
CB C:TRP194 4.0 11.8 1.0
CD2 C:LEU296 4.1 12.0 1.0
C C:PRO195 4.3 14.8 1.0
C C:GLU196 4.4 17.5 1.0
CG C:PRO195 4.5 14.0 1.0
CD1 C:TRP194 4.5 11.7 1.0
O C:HOH760 4.5 24.4 1.0
CA C:PRO195 4.5 14.2 1.0
CG C:TRP194 4.6 11.9 1.0
N C:TRP194 4.8 12.2 1.0
O C:HOH720 4.8 31.9 1.0
CE2 C:PHE284 4.8 13.3 1.0
CD2 C:PHE284 5.0 12.9 1.0

Chlorine binding site 9 out of 11 in 3fj1

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Chlorine binding site 9 out of 11 in the Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl344

b:20.2
occ:1.00
 O D:HOH347 3.0 25.8 1.0
O D:HOH380 3.1 12.2 1.0
OG D:SER98 3.1 12.0 1.0
O D:HOH769 3.2 26.5 1.0
O D:HOH573 3.3 22.4 1.0
NH1 D:ARG50 3.5 22.9 1.0
CG D:ARG50 3.7 16.0 1.0
CD D:ARG50 3.7 18.9 1.0
CB D:SER98 3.8 12.6 1.0
CB D:SER103 4.0 17.0 1.0
CA D:SER98 4.3 12.2 1.0
CG1 D:ILE106 4.5 11.0 1.0
CZ D:ARG50 4.5 22.0 1.0
NE D:ARG50 4.6 20.6 1.0
O D:HOH959 4.8 27.0 1.0
N D:GLN99 4.8 14.3 1.0
OG D:SER103 4.8 16.8 1.0
C D:SER98 5.0 13.5 1.0

Chlorine binding site 10 out of 11 in 3fj1

Go back to Chlorine Binding Sites List in 3fj1
Chlorine binding site 10 out of 11 in the Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Putative Phosphosugar Isomerase (YP_167080.1) From Silicibacter Pomeroyi Dss-3 at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl345

b:13.2
occ:1.00
 OG D:SER238 3.0 9.8 1.0
O D:HOH402 3.1 15.1 1.0
O D:HOH583 3.2 17.7 1.0
NH1 D:ARG212 3.3 13.0 1.0
N D:GLY213 3.4 10.1 1.0
CB D:SER238 3.6 10.2 1.0
CD D:ARG212 3.6 11.9 1.0
CA D:ARG212 3.9 10.6 1.0
CD2 D:LEU216 4.0 10.6 1.0
C D:ARG212 4.1 10.5 1.0
OH D:TYR62 4.2 13.1 1.0
CZ D:ARG212 4.3 12.5 1.0
OG C:SER78 4.3 10.2 1.0
CA D:GLY213 4.4 10.4 1.0
NE D:ARG212 4.4 12.1 1.0
CB C:SER78 4.4 9.4 1.0
O D:HOH952 4.4 28.4 1.0
O D:GLY211 4.5 10.3 1.0
CA D:SER238 4.5 9.7 1.0
CG D:ARG212 4.6 11.6 1.0
CB D:ARG212 4.7 10.8 1.0
CB D:LEU216 4.8 9.0 1.0
N D:ARG212 4.8 10.7 1.0
CG D:LEU216 4.9 9.0 1.0
O D:GLY213 4.9 10.6 1.0
C D:GLY211 5.0 10.2 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Jul 20 19:25:53 2024

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