Chlorine in PDB 3fp3: Crystal Structure of TOM71
Protein crystallography data
The structure of Crystal Structure of TOM71, PDB code: 3fp3
was solved by
J.Li,
X.Qian,
J.Hu,
B.Sha,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.63 /
1.98
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
76.901,
83.416,
109.114,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.7 /
22.7
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of TOM71
(pdb code 3fp3). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of TOM71, PDB code: 3fp3:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 3fp3
Go back to
Chlorine Binding Sites List in 3fp3
Chlorine binding site 1 out
of 4 in the Crystal Structure of TOM71
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of TOM71 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1
b:58.3
occ:1.00
|
O
|
A:HOH986
|
3.1
|
24.4
|
1.0
|
CD1
|
A:LEU115
|
3.3
|
30.8
|
1.0
|
CD2
|
A:LEU115
|
3.5
|
31.8
|
1.0
|
CG
|
A:LEU115
|
3.6
|
30.9
|
1.0
|
CB
|
A:PRO110
|
4.0
|
35.7
|
1.0
|
CE2
|
A:TYR126
|
4.3
|
32.8
|
1.0
|
N
|
A:ASP111
|
4.4
|
34.5
|
1.0
|
CA
|
A:PRO110
|
4.5
|
35.9
|
1.0
|
O
|
A:ASP111
|
4.9
|
36.2
|
1.0
|
CD2
|
A:TYR126
|
4.9
|
32.0
|
1.0
|
CZ
|
A:TYR126
|
4.9
|
30.3
|
1.0
|
C
|
A:PRO110
|
4.9
|
35.2
|
1.0
|
OH
|
A:TYR126
|
4.9
|
32.6
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 3fp3
Go back to
Chlorine Binding Sites List in 3fp3
Chlorine binding site 2 out
of 4 in the Crystal Structure of TOM71
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of TOM71 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl640
b:53.9
occ:1.00
|
O
|
A:ASP157
|
2.7
|
31.1
|
1.0
|
O
|
A:GLU160
|
2.9
|
33.0
|
1.0
|
N
|
A:GLU160
|
3.0
|
35.4
|
1.0
|
CD2
|
A:PHE163
|
3.2
|
26.0
|
1.0
|
C
|
A:PRO158
|
3.2
|
32.9
|
1.0
|
N
|
A:ASN159
|
3.4
|
34.4
|
1.0
|
CA
|
A:PRO158
|
3.4
|
32.5
|
1.0
|
CE2
|
A:TYR164
|
3.4
|
31.5
|
1.0
|
C
|
A:GLU160
|
3.5
|
34.7
|
1.0
|
CA
|
A:GLU160
|
3.5
|
35.1
|
1.0
|
CZ
|
A:TYR164
|
3.6
|
28.7
|
1.0
|
O
|
A:PRO158
|
3.6
|
33.5
|
1.0
|
OH
|
A:TYR164
|
3.6
|
29.5
|
1.0
|
C
|
A:ASP157
|
3.7
|
32.1
|
1.0
|
CB
|
A:GLU160
|
3.7
|
35.6
|
1.0
|
CB
|
A:PHE163
|
3.8
|
26.6
|
1.0
|
CG
|
A:PHE163
|
3.8
|
26.9
|
1.0
|
N
|
A:PRO158
|
4.0
|
31.6
|
1.0
|
CE2
|
A:PHE163
|
4.0
|
24.6
|
1.0
|
CG1
|
A:ILE154
|
4.0
|
30.5
|
1.0
|
C
|
A:ASN159
|
4.0
|
35.5
|
1.0
|
CD2
|
A:TYR164
|
4.1
|
29.4
|
1.0
|
CA
|
A:ASN159
|
4.2
|
35.2
|
1.0
|
CE1
|
A:TYR164
|
4.3
|
27.1
|
1.0
|
CA
|
A:ILE154
|
4.4
|
31.4
|
1.0
|
CB
|
A:ILE154
|
4.6
|
31.8
|
1.0
|
CG2
|
A:ILE154
|
4.7
|
32.3
|
1.0
|
N
|
A:PRO161
|
4.7
|
34.9
|
1.0
|
CG
|
A:TYR164
|
4.8
|
27.3
|
1.0
|
CB
|
A:PRO158
|
4.8
|
32.2
|
1.0
|
CG
|
A:GLU160
|
4.9
|
38.2
|
1.0
|
CD1
|
A:TYR164
|
4.9
|
23.2
|
1.0
|
CA
|
A:PHE163
|
4.9
|
27.7
|
1.0
|
OD1
|
A:ASP157
|
5.0
|
33.9
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 3fp3
Go back to
Chlorine Binding Sites List in 3fp3
Chlorine binding site 3 out
of 4 in the Crystal Structure of TOM71
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of TOM71 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl641
b:44.8
occ:1.00
|
O
|
A:HOH990
|
2.8
|
14.9
|
1.0
|
O
|
A:ASN241
|
2.8
|
28.6
|
1.0
|
CG
|
A:MET245
|
3.0
|
36.0
|
0.5
|
C
|
A:ASN241
|
3.5
|
30.6
|
1.0
|
CD1
|
A:LEU601
|
3.5
|
34.2
|
1.0
|
CD2
|
A:LEU601
|
3.5
|
37.9
|
1.0
|
CA
|
A:ASN241
|
3.5
|
30.5
|
1.0
|
CB
|
A:ASN241
|
3.6
|
30.7
|
1.0
|
SD
|
A:MET245
|
3.8
|
40.6
|
0.5
|
CE
|
A:MET245
|
3.9
|
32.6
|
0.5
|
CG
|
A:LEU601
|
3.9
|
36.5
|
1.0
|
OD1
|
A:ASN241
|
4.0
|
39.6
|
1.0
|
CB
|
A:MET245
|
4.0
|
30.4
|
0.5
|
N
|
A:MET245
|
4.1
|
32.5
|
0.5
|
CG
|
A:ASN241
|
4.1
|
35.2
|
1.0
|
N
|
A:MET245
|
4.1
|
31.3
|
0.5
|
CB
|
A:MET245
|
4.2
|
33.0
|
0.5
|
CB
|
A:ALA244
|
4.2
|
29.4
|
1.0
|
CA
|
A:MET245
|
4.5
|
31.5
|
0.5
|
CA
|
A:MET245
|
4.5
|
34.2
|
0.5
|
N
|
A:LYS242
|
4.7
|
30.4
|
1.0
|
OG1
|
A:THR605
|
4.7
|
32.3
|
1.0
|
C
|
A:ALA244
|
4.8
|
31.9
|
1.0
|
O
|
A:HOH1051
|
4.8
|
38.9
|
1.0
|
SD
|
A:MET245
|
4.9
|
32.5
|
0.5
|
N
|
A:ASN241
|
5.0
|
29.7
|
1.0
|
CG
|
A:MET245
|
5.0
|
32.6
|
0.5
|
|
Chlorine binding site 4 out
of 4 in 3fp3
Go back to
Chlorine Binding Sites List in 3fp3
Chlorine binding site 4 out
of 4 in the Crystal Structure of TOM71
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of TOM71 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl642
b:51.1
occ:1.00
|
O
|
A:HOH784
|
2.6
|
34.7
|
1.0
|
O
|
A:GLY519
|
2.8
|
28.7
|
1.0
|
CD
|
A:PRO522
|
3.5
|
31.2
|
1.0
|
CG
|
A:LEU523
|
3.5
|
37.2
|
1.0
|
CB
|
A:PRO522
|
3.7
|
31.9
|
1.0
|
CG
|
A:PRO522
|
3.7
|
31.4
|
1.0
|
CA
|
A:ILE520
|
3.8
|
30.0
|
1.0
|
N
|
A:LEU523
|
3.9
|
32.7
|
1.0
|
C
|
A:GLY519
|
3.9
|
29.8
|
1.0
|
CD2
|
A:LEU523
|
3.9
|
40.9
|
1.0
|
C
|
A:ILE520
|
4.1
|
30.1
|
1.0
|
N
|
A:PRO522
|
4.1
|
32.3
|
1.0
|
CG
|
A:GLU510
|
4.3
|
30.1
|
1.0
|
O
|
A:ILE520
|
4.3
|
31.2
|
1.0
|
CA
|
A:LYS507
|
4.3
|
32.3
|
1.0
|
CD1
|
A:LEU523
|
4.4
|
38.7
|
1.0
|
N
|
A:ILE520
|
4.4
|
28.8
|
1.0
|
CA
|
A:PRO522
|
4.4
|
31.5
|
1.0
|
CB
|
A:GLU510
|
4.4
|
31.0
|
1.0
|
CG
|
A:LYS507
|
4.4
|
34.1
|
1.0
|
CB
|
A:LYS507
|
4.5
|
32.1
|
1.0
|
CB
|
A:LEU523
|
4.5
|
34.3
|
1.0
|
O
|
A:HOH1081
|
4.5
|
34.6
|
1.0
|
C
|
A:PRO522
|
4.6
|
33.2
|
1.0
|
N
|
A:GLY521
|
4.6
|
29.5
|
1.0
|
CA
|
A:LEU523
|
4.8
|
34.2
|
1.0
|
CB
|
A:ILE520
|
5.0
|
29.5
|
1.0
|
O
|
A:LYS507
|
5.0
|
30.1
|
1.0
|
|
Reference:
J.Li,
X.Qian,
J.Hu,
B.Sha.
Molecular Chaperone HSP70/HSP90 Prepares the Mitochondrial Outer Membrane Translocon Receptor TOM71 For Preprotein Loading. J.Biol.Chem. V. 284 23852 2009.
ISSN: ISSN 0021-9258
PubMed: 19581297
DOI: 10.1074/JBC.M109.023986
Page generated: Sat Jul 20 19:32:35 2024
|