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Chlorine in PDB 3fp3: Crystal Structure of TOM71

Protein crystallography data

The structure of Crystal Structure of TOM71, PDB code: 3fp3 was solved by J.Li, X.Qian, J.Hu, B.Sha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.63 / 1.98
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 76.901, 83.416, 109.114, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 22.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of TOM71 (pdb code 3fp3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of TOM71, PDB code: 3fp3:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3fp3

Go back to Chlorine Binding Sites List in 3fp3
Chlorine binding site 1 out of 4 in the Crystal Structure of TOM71


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of TOM71 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1

b:58.3
occ:1.00
O A:HOH986 3.1 24.4 1.0
CD1 A:LEU115 3.3 30.8 1.0
CD2 A:LEU115 3.5 31.8 1.0
CG A:LEU115 3.6 30.9 1.0
CB A:PRO110 4.0 35.7 1.0
CE2 A:TYR126 4.3 32.8 1.0
N A:ASP111 4.4 34.5 1.0
CA A:PRO110 4.5 35.9 1.0
O A:ASP111 4.9 36.2 1.0
CD2 A:TYR126 4.9 32.0 1.0
CZ A:TYR126 4.9 30.3 1.0
C A:PRO110 4.9 35.2 1.0
OH A:TYR126 4.9 32.6 1.0

Chlorine binding site 2 out of 4 in 3fp3

Go back to Chlorine Binding Sites List in 3fp3
Chlorine binding site 2 out of 4 in the Crystal Structure of TOM71


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of TOM71 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl640

b:53.9
occ:1.00
O A:ASP157 2.7 31.1 1.0
O A:GLU160 2.9 33.0 1.0
N A:GLU160 3.0 35.4 1.0
CD2 A:PHE163 3.2 26.0 1.0
C A:PRO158 3.2 32.9 1.0
N A:ASN159 3.4 34.4 1.0
CA A:PRO158 3.4 32.5 1.0
CE2 A:TYR164 3.4 31.5 1.0
C A:GLU160 3.5 34.7 1.0
CA A:GLU160 3.5 35.1 1.0
CZ A:TYR164 3.6 28.7 1.0
O A:PRO158 3.6 33.5 1.0
OH A:TYR164 3.6 29.5 1.0
C A:ASP157 3.7 32.1 1.0
CB A:GLU160 3.7 35.6 1.0
CB A:PHE163 3.8 26.6 1.0
CG A:PHE163 3.8 26.9 1.0
N A:PRO158 4.0 31.6 1.0
CE2 A:PHE163 4.0 24.6 1.0
CG1 A:ILE154 4.0 30.5 1.0
C A:ASN159 4.0 35.5 1.0
CD2 A:TYR164 4.1 29.4 1.0
CA A:ASN159 4.2 35.2 1.0
CE1 A:TYR164 4.3 27.1 1.0
CA A:ILE154 4.4 31.4 1.0
CB A:ILE154 4.6 31.8 1.0
CG2 A:ILE154 4.7 32.3 1.0
N A:PRO161 4.7 34.9 1.0
CG A:TYR164 4.8 27.3 1.0
CB A:PRO158 4.8 32.2 1.0
CG A:GLU160 4.9 38.2 1.0
CD1 A:TYR164 4.9 23.2 1.0
CA A:PHE163 4.9 27.7 1.0
OD1 A:ASP157 5.0 33.9 1.0

Chlorine binding site 3 out of 4 in 3fp3

Go back to Chlorine Binding Sites List in 3fp3
Chlorine binding site 3 out of 4 in the Crystal Structure of TOM71


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of TOM71 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl641

b:44.8
occ:1.00
O A:HOH990 2.8 14.9 1.0
O A:ASN241 2.8 28.6 1.0
CG A:MET245 3.0 36.0 0.5
C A:ASN241 3.5 30.6 1.0
CD1 A:LEU601 3.5 34.2 1.0
CD2 A:LEU601 3.5 37.9 1.0
CA A:ASN241 3.5 30.5 1.0
CB A:ASN241 3.6 30.7 1.0
SD A:MET245 3.8 40.6 0.5
CE A:MET245 3.9 32.6 0.5
CG A:LEU601 3.9 36.5 1.0
OD1 A:ASN241 4.0 39.6 1.0
CB A:MET245 4.0 30.4 0.5
N A:MET245 4.1 32.5 0.5
CG A:ASN241 4.1 35.2 1.0
N A:MET245 4.1 31.3 0.5
CB A:MET245 4.2 33.0 0.5
CB A:ALA244 4.2 29.4 1.0
CA A:MET245 4.5 31.5 0.5
CA A:MET245 4.5 34.2 0.5
N A:LYS242 4.7 30.4 1.0
OG1 A:THR605 4.7 32.3 1.0
C A:ALA244 4.8 31.9 1.0
O A:HOH1051 4.8 38.9 1.0
SD A:MET245 4.9 32.5 0.5
N A:ASN241 5.0 29.7 1.0
CG A:MET245 5.0 32.6 0.5

Chlorine binding site 4 out of 4 in 3fp3

Go back to Chlorine Binding Sites List in 3fp3
Chlorine binding site 4 out of 4 in the Crystal Structure of TOM71


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of TOM71 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl642

b:51.1
occ:1.00
O A:HOH784 2.6 34.7 1.0
O A:GLY519 2.8 28.7 1.0
CD A:PRO522 3.5 31.2 1.0
CG A:LEU523 3.5 37.2 1.0
CB A:PRO522 3.7 31.9 1.0
CG A:PRO522 3.7 31.4 1.0
CA A:ILE520 3.8 30.0 1.0
N A:LEU523 3.9 32.7 1.0
C A:GLY519 3.9 29.8 1.0
CD2 A:LEU523 3.9 40.9 1.0
C A:ILE520 4.1 30.1 1.0
N A:PRO522 4.1 32.3 1.0
CG A:GLU510 4.3 30.1 1.0
O A:ILE520 4.3 31.2 1.0
CA A:LYS507 4.3 32.3 1.0
CD1 A:LEU523 4.4 38.7 1.0
N A:ILE520 4.4 28.8 1.0
CA A:PRO522 4.4 31.5 1.0
CB A:GLU510 4.4 31.0 1.0
CG A:LYS507 4.4 34.1 1.0
CB A:LYS507 4.5 32.1 1.0
CB A:LEU523 4.5 34.3 1.0
O A:HOH1081 4.5 34.6 1.0
C A:PRO522 4.6 33.2 1.0
N A:GLY521 4.6 29.5 1.0
CA A:LEU523 4.8 34.2 1.0
CB A:ILE520 5.0 29.5 1.0
O A:LYS507 5.0 30.1 1.0

Reference:

J.Li, X.Qian, J.Hu, B.Sha. Molecular Chaperone HSP70/HSP90 Prepares the Mitochondrial Outer Membrane Translocon Receptor TOM71 For Preprotein Loading. J.Biol.Chem. V. 284 23852 2009.
ISSN: ISSN 0021-9258
PubMed: 19581297
DOI: 10.1074/JBC.M109.023986
Page generated: Sat Jul 20 19:32:35 2024

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