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Chlorine in PDB 3fp4: Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment

Protein crystallography data

The structure of Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment, PDB code: 3fp4 was solved by J.Li, X.Qian, J.Hu, B.Sha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.14
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.820, 116.025, 150.649, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 26.1

Other elements in 3fp4:

The structure of Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment also contains other interesting chemical elements:

Sodium (Na) 3 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment (pdb code 3fp4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment, PDB code: 3fp4:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 11 in 3fp4

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Chlorine binding site 1 out of 11 in the Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment


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Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1

b:20.3
occ:1.00
 OD2 A:ASP217 2.7 15.6 1.0
ND2 A:ASN205 2.7 16.9 1.0
O A:ASP213 2.9 15.4 1.0
C A:ASP213 3.2 15.5 1.0
O A:ARG201 3.3 16.3 1.0
CA A:ALA202 3.3 16.2 1.0
CG A:ASP217 3.3 16.3 1.0
N A:ALA214 3.5 15.2 1.0
N A:ALA202 3.5 15.9 1.0
CA A:ALA214 3.5 16.2 1.0
C A:ARG201 3.5 15.2 1.0
CB A:ASP217 3.6 15.6 1.0
CG A:ASN205 3.6 16.2 1.0
CB A:ASN205 3.7 14.5 1.0
CD A:ARG201 3.9 17.6 1.0
CB A:ASP213 4.0 15.9 1.0
CG A:ARG201 4.1 14.7 1.0
CB A:ALA202 4.1 15.7 1.0
CA A:ASP213 4.2 15.9 1.0
OD1 A:ASP217 4.2 18.8 1.0
O A:HOH662 4.3 2.0 1.0
O A:ALA214 4.3 17.9 1.0
C A:ALA202 4.4 17.0 1.0
CB A:ARG201 4.4 14.8 1.0
C A:ALA214 4.4 16.9 1.0
O A:ALA202 4.5 17.6 1.0
CA A:ARG201 4.6 15.1 1.0
CB A:ALA214 4.6 16.6 1.0
N A:ASP217 4.7 18.2 1.0
CA A:ASP217 4.7 17.5 1.0
OD1 A:ASN205 4.8 14.0 1.0

Chlorine binding site 2 out of 11 in 3fp4

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Chlorine binding site 2 out of 11 in the Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment


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Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl640

b:38.5
occ:1.00
 OG1 A:THR212 2.7 15.9 1.0
C A:ASN210 3.1 17.6 1.0
N A:ASP213 3.1 14.7 1.0
CA A:ASN210 3.2 19.3 1.0
CB A:ASN210 3.2 18.6 1.0
CG A:ASP213 3.3 18.1 1.0
O A:ASN210 3.3 16.8 1.0
OD2 A:ASP213 3.4 23.3 1.0
N A:THR212 3.5 13.5 1.0
OD1 A:ASP213 3.6 16.2 1.0
N A:PHE211 3.6 15.8 1.0
CB A:ASP213 3.7 15.9 1.0
CB A:THR212 3.9 13.9 1.0
CA A:THR212 4.0 14.8 1.0
C A:THR212 4.0 15.1 1.0
CA A:ASP213 4.0 15.9 1.0
CG A:ASN210 4.1 21.3 1.0
OD1 A:ASN210 4.1 18.7 1.0
C A:PHE211 4.3 13.3 1.0
CA A:PHE211 4.5 14.8 1.0
N A:ASN210 4.6 20.2 1.0
CG2 A:THR212 4.7 17.2 1.0

Chlorine binding site 3 out of 11 in 3fp4

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Chlorine binding site 3 out of 11 in the Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl641

b:20.9
occ:1.00
 OE1 A:GLU608 2.9 17.2 1.0
O A:GLU608 2.9 18.7 1.0
CG2 A:THR212 3.5 17.2 1.0
CG1 A:ILE612 3.6 17.4 1.0
C A:GLU608 3.6 17.6 1.0
CA A:GLU608 3.7 16.7 1.0
CB A:LYS611 3.7 17.4 1.0
CB A:GLU608 3.8 16.5 1.0
CD1 A:ILE612 3.8 18.9 1.0
CD A:GLU608 3.8 21.0 1.0
CG A:GLN243 4.0 16.2 1.0
CE A:MET215 4.0 16.5 1.0
N A:ILE612 4.2 17.3 1.0
CD A:LYS611 4.3 24.2 1.0
CG A:GLU608 4.3 15.2 1.0
NE2 A:GLN243 4.3 10.6 1.0
CD A:GLN243 4.5 17.2 1.0
C A:LYS611 4.5 17.6 1.0
CB A:THR212 4.6 13.9 1.0
CA A:LYS611 4.6 17.9 1.0
CG A:LYS611 4.6 17.9 1.0
CB A:ILE612 4.8 18.4 1.0
OE2 A:GLU608 4.8 19.2 1.0
CA A:ILE612 4.9 18.1 1.0
N A:ALA609 4.9 18.4 1.0

Chlorine binding site 4 out of 11 in 3fp4

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Chlorine binding site 4 out of 11 in the Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl642

b:6.1
occ:1.00
 O A:ASN445 2.7 13.2 1.0
O A:ASN442 2.8 21.7 1.0
CG A:PRO448 3.2 13.1 1.0
CE2 A:TYR449 3.3 18.1 1.0
CA A:GLN439 3.4 19.0 0.2
CA A:GLN439 3.4 19.0 0.2
CA A:GLN439 3.4 19.8 0.5
CB A:PRO448 3.4 14.2 1.0
CD A:PRO448 3.4 12.3 1.0
CG A:GLN439 3.5 17.8 0.2
CG A:GLN439 3.5 18.0 0.2
CD2 A:TYR449 3.6 16.2 1.0
C A:ASN445 3.7 15.3 1.0
CG A:GLN439 3.8 23.3 0.5
O A:GLN439 3.8 20.2 1.0
CB A:GLN439 3.8 18.6 0.2
C A:ASN442 3.8 23.3 1.0
CB A:GLN439 3.8 18.6 0.2
CB A:GLN439 3.8 19.7 0.5
CA A:PRO443 3.9 20.4 1.0
N A:ASN445 4.0 18.1 1.0
C A:PRO443 4.1 19.4 1.0
C A:GLN439 4.1 20.4 1.0
O A:PRO443 4.2 17.6 1.0
CA A:ASN445 4.2 17.1 1.0
CZ A:TYR449 4.3 22.3 1.0
CB A:ASN445 4.3 17.3 1.0
N A:GLN439 4.3 18.1 1.0
N A:PRO443 4.3 22.9 1.0
N A:PRO448 4.3 14.0 1.0
O A:ALA438 4.4 15.2 1.0
CA A:PRO448 4.4 14.0 1.0
N A:TYR449 4.6 14.3 1.0
N A:GLU444 4.6 18.1 1.0
C A:ALA438 4.7 17.4 1.0
OH A:TYR449 4.7 24.5 1.0
CG A:TYR449 4.8 16.8 1.0
CD A:GLN439 4.8 27.3 0.5
CD A:GLN439 4.8 15.2 0.2
CD A:GLN439 4.9 15.7 0.2
N A:VAL446 4.9 13.7 1.0
C A:PRO448 5.0 14.3 1.0
NE2 A:GLN439 5.0 26.0 0.5
CA A:ASN442 5.0 24.1 1.0

Chlorine binding site 5 out of 11 in 3fp4

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Chlorine binding site 5 out of 11 in the Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl646

b:24.9
occ:1.00
 NH2 A:ARG201 3.4 19.0 1.0
CB A:LEU188 3.9 15.1 1.0
NH1 A:ARG201 3.9 13.3 1.0
O A:HOH661 4.0 2.2 1.0
CZ A:ARG201 4.1 20.1 1.0
O A:HOH775 4.1 2.0 1.0
C A:LEU188 4.3 15.7 1.0
O A:LEU188 4.4 15.2 1.0
N A:GLU189 4.6 17.2 1.0
O A:HOH749 4.6 4.3 1.0
CA A:LEU188 4.8 14.4 1.0
CD1 A:LEU188 4.8 6.7 1.0
CG A:LEU188 4.9 14.0 1.0
CG2 A:THR185 5.0 13.1 1.0

Chlorine binding site 6 out of 11 in 3fp4

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Chlorine binding site 6 out of 11 in the Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl648

b:5.1
occ:1.00
 O A:ASN286 2.6 20.3 1.0
N A:SER289 3.1 22.4 1.0
CB A:SER289 3.2 20.3 1.0
C A:THR287 3.2 21.6 1.0
N A:SER288 3.4 23.7 1.0
CA A:THR287 3.4 20.4 1.0
C A:ASN286 3.4 19.5 1.0
ND2 A:ASN343 3.6 12.4 1.0
O A:THR287 3.6 22.0 1.0
CD2 A:TYR295 3.7 17.0 1.0
CA A:SER289 3.7 21.5 1.0
CG A:TYR295 3.7 16.9 1.0
N A:THR287 3.8 20.6 1.0
CB A:ASP292 3.9 20.2 1.0
CE2 A:TYR295 4.0 20.5 1.0
CD1 A:TYR295 4.1 17.4 1.0
C A:SER288 4.1 24.7 1.0
CB A:TYR295 4.2 15.2 1.0
OD2 A:ASP292 4.2 16.3 1.0
CA A:SER288 4.3 24.2 1.0
CZ A:TYR295 4.4 22.7 1.0
O A:SER289 4.4 21.8 1.0
CE1 A:TYR295 4.4 21.1 1.0
CG A:ASP292 4.4 20.7 1.0
OG A:SER289 4.5 16.2 1.0
C A:SER289 4.5 22.1 1.0
CA A:ASN286 4.7 19.9 1.0
CB A:PRO339 4.7 17.3 1.0
CB A:ASN286 4.8 20.7 1.0
CG A:ASN343 4.8 13.5 1.0
OD1 A:ASN286 4.9 27.5 1.0
CB A:THR287 4.9 20.9 1.0
O A:ASP292 4.9 23.1 1.0

Chlorine binding site 7 out of 11 in 3fp4

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Chlorine binding site 7 out of 11 in the Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl649

b:3.1
occ:1.00
 O A:LEU305 2.9 15.5 1.0
O A:ARG304 2.9 14.4 1.0
N A:THR309 3.0 17.9 1.0
O A:THR309 3.0 15.9 1.0
N A:ALA308 3.0 14.8 1.0
N A:TYR313 3.1 14.6 1.0
C A:GLY312 3.2 13.6 1.0
CA A:GLY312 3.2 14.0 1.0
CA A:ALA308 3.4 16.1 1.0
OG A:SER307 3.4 16.1 1.0
CD1 A:TYR313 3.5 13.8 1.0
CG A:TYR313 3.6 10.2 1.0
CE1 A:TYR313 3.6 9.1 1.0
CD2 A:TYR313 3.6 9.5 1.0
CZ A:TYR313 3.7 8.3 1.0
C A:ALA308 3.7 16.4 1.0
C A:LEU305 3.7 14.0 1.0
CE2 A:TYR313 3.7 12.4 1.0
C A:THR309 3.9 16.8 1.0
O A:GLY312 3.9 13.0 1.0
C A:SER307 3.9 15.3 1.0
CA A:THR309 4.0 16.3 1.0
CA A:TYR313 4.0 14.6 1.0
C A:ARG304 4.1 15.1 1.0
N A:GLY312 4.1 16.2 1.0
CA A:LEU305 4.1 12.1 1.0
OG1 A:THR309 4.1 19.8 1.0
CB A:TYR313 4.3 14.4 1.0
N A:SER307 4.3 14.5 1.0
OH A:TYR313 4.4 15.2 1.0
CA A:SER307 4.4 15.5 1.0
CB A:SER307 4.5 13.7 1.0
N A:LEU305 4.6 12.4 1.0
CB A:THR309 4.7 18.4 1.0
O A:HOH669 4.7 2.0 1.0
N A:TYR306 4.8 12.6 1.0
CB A:ALA308 4.8 14.3 1.0
O A:SER307 4.8 14.8 1.0
O A:ALA308 4.9 17.6 1.0
C A:TYR306 5.0 14.1 1.0

Chlorine binding site 8 out of 11 in 3fp4

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Chlorine binding site 8 out of 11 in the Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl650

b:9.7
occ:1.00
 O A:HOH673 2.7 2.0 1.0
O A:ASN317 3.0 13.9 1.0
OD1 A:ASN317 3.0 14.3 1.0
OG1 A:THR321 3.1 13.3 1.0
CB A:PHE354 3.5 12.4 1.0
CA A:ASN317 3.7 14.1 1.0
C A:ASN317 3.7 14.4 1.0
CB A:LEU320 3.7 14.2 1.0
CG A:ASN317 3.8 13.5 1.0
NZ A:LYS358 3.9 13.8 1.0
O A:HOH674 3.9 2.0 1.0
N A:THR321 3.9 12.9 1.0
CG A:PHE354 3.9 14.7 1.0
CG2 A:THR351 3.9 13.7 1.0
CD2 A:PHE354 4.1 16.9 1.0
CB A:ASN317 4.3 14.2 1.0
CB A:THR321 4.3 13.4 1.0
CA A:THR351 4.4 13.1 1.0
CA A:THR321 4.5 13.9 1.0
C A:LEU320 4.5 14.4 1.0
O A:THR351 4.6 12.6 1.0
CD1 A:LEU320 4.6 10.1 1.0
CB A:THR351 4.6 12.5 1.0
CA A:LEU320 4.7 14.0 1.0
CE A:LYS358 4.7 18.0 1.0
OG1 A:THR351 4.8 15.3 1.0
CG A:LEU320 4.8 12.7 1.0
O A:ALA316 4.8 15.2 1.0
ND2 A:ASN317 4.9 11.8 1.0
CD1 A:PHE354 4.9 16.8 1.0
N A:ASN317 4.9 14.0 1.0
CA A:PHE354 5.0 13.1 1.0

Chlorine binding site 9 out of 11 in 3fp4

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Chlorine binding site 9 out of 11 in the Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl651

b:22.1
occ:1.00
 O A:LEU374 3.5 13.6 1.0
CG A:GLU342 4.1 18.7 1.0
OE2 A:GLU342 4.2 27.8 1.0
ND1 A:HIS375 4.3 19.6 1.0
OD1 A:ASP338 4.3 22.5 1.0
CG A:ASP338 4.3 23.4 1.0
CB A:ARG341 4.4 14.8 1.0
CB A:HIS375 4.5 14.3 1.0
CB A:ASP338 4.5 21.9 1.0
O A:ASP338 4.6 20.6 1.0
CG A:HIS375 4.6 15.8 1.0
CD A:ARG341 4.6 21.0 1.0
C A:LEU374 4.7 14.5 1.0
CD A:GLU342 4.7 26.4 1.0
OD2 A:ASP338 4.7 29.6 1.0
CA A:HIS375 4.9 13.8 1.0
CA A:ASP338 4.9 21.6 1.0

Chlorine binding site 10 out of 11 in 3fp4

Go back to Chlorine Binding Sites List in 3fp4
Chlorine binding site 10 out of 11 in the Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of TOM71 Complexed with SSA1 C-Terminal Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl652

b:18.5
occ:1.00
 NE2 A:GLN426 4.1 17.2 1.0
CD A:GLN426 4.2 18.6 1.0
CG A:GLN426 4.5 14.6 1.0
O A:ILE424 4.5 18.9 1.0
O A:LEU425 4.5 13.5 1.0
OE1 A:GLN426 4.5 18.9 1.0
C A:LEU425 4.6 14.6 1.0
CA A:LEU425 4.8 15.3 1.0

Reference:

J.Li, X.Qian, J.Hu, B.Sha. Molecular Chaperone HSP70/HSP90 Prepares the Mitochondrial Outer Membrane Translocon Receptor TOM71 For Preprotein Loading. J.Biol.Chem. V. 284 23852 2009.
ISSN: ISSN 0021-9258
PubMed: 19581297
DOI: 10.1074/JBC.M109.023986
Page generated: Sat Jul 20 19:32:39 2024

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