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Chlorine in PDB 3fsf: P38 Kinase Crystal Structure in Complex with 3-(2,6- Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]- 1-Methyl-3,4-Dihydro-1H-Pyrimido[4,5-D]Pyrimidin-2-One

Enzymatic activity of P38 Kinase Crystal Structure in Complex with 3-(2,6- Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]- 1-Methyl-3,4-Dihydro-1H-Pyrimido[4,5-D]Pyrimidin-2-One

All present enzymatic activity of P38 Kinase Crystal Structure in Complex with 3-(2,6- Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]- 1-Methyl-3,4-Dihydro-1H-Pyrimido[4,5-D]Pyrimidin-2-One:
2.7.11.24;

Protein crystallography data

The structure of P38 Kinase Crystal Structure in Complex with 3-(2,6- Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]- 1-Methyl-3,4-Dihydro-1H-Pyrimido[4,5-D]Pyrimidin-2-One, PDB code: 3fsf was solved by A.Kuglstatter, J.Bertrand, B.Lovejoy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 9.96 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 45.202, 86.402, 124.158, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Chlorine Binding Sites:

The binding sites of Chlorine atom in the P38 Kinase Crystal Structure in Complex with 3-(2,6- Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]- 1-Methyl-3,4-Dihydro-1H-Pyrimido[4,5-D]Pyrimidin-2-One (pdb code 3fsf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the P38 Kinase Crystal Structure in Complex with 3-(2,6- Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]- 1-Methyl-3,4-Dihydro-1H-Pyrimido[4,5-D]Pyrimidin-2-One, PDB code: 3fsf:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3fsf

Go back to Chlorine Binding Sites List in 3fsf
Chlorine binding site 1 out of 2 in the P38 Kinase Crystal Structure in Complex with 3-(2,6- Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]- 1-Methyl-3,4-Dihydro-1H-Pyrimido[4,5-D]Pyrimidin-2-One


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of P38 Kinase Crystal Structure in Complex with 3-(2,6- Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]- 1-Methyl-3,4-Dihydro-1H-Pyrimido[4,5-D]Pyrimidin-2-One within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl450

b:41.8
occ:1.00
CL36 A:FSS450 0.0 41.8 1.0
C15 A:FSS450 1.7 44.6 1.0
C16 A:FSS450 2.7 44.5 1.0
C14 A:FSS450 2.8 45.0 1.0
N11 A:FSS450 3.0 46.5 1.0
O A:ALA51 3.4 28.4 1.0
C12 A:FSS450 3.5 46.6 1.0
CB A:LYS53 3.7 31.2 1.0
N A:LYS53 3.7 30.8 1.0
OG1 A:THR106 3.7 29.3 1.0
C10 A:FSS450 3.7 46.9 1.0
C A:ALA51 3.7 28.2 1.0
CB A:ALA51 3.7 28.6 1.0
O A:LEU104 3.8 25.6 1.0
CG2 A:THR106 4.0 28.2 1.0
O34 A:FSS450 4.0 47.0 1.0
C17 A:FSS450 4.1 44.8 1.0
C19 A:FSS450 4.2 44.9 1.0
C A:VAL52 4.2 30.0 1.0
N A:VAL52 4.2 28.6 1.0
CA A:LYS53 4.3 30.8 1.0
CA A:VAL52 4.3 29.1 1.0
CA A:ALA51 4.4 28.5 1.0
CG1 A:VAL38 4.4 34.0 1.0
C7 A:FSS450 4.4 47.2 1.0
CB A:THR106 4.4 29.2 1.0
N A:THR106 4.5 26.9 1.0
N9 A:FSS450 4.6 47.4 1.0
C18 A:FSS450 4.6 44.9 1.0
C A:LEU104 4.7 25.2 1.0
CG2 A:VAL38 4.8 35.1 1.0
C8 A:FSS450 4.9 47.5 1.0
O A:VAL52 4.9 29.7 1.0
CG A:LYS53 5.0 31.6 1.0

Chlorine binding site 2 out of 2 in 3fsf

Go back to Chlorine Binding Sites List in 3fsf
Chlorine binding site 2 out of 2 in the P38 Kinase Crystal Structure in Complex with 3-(2,6- Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]- 1-Methyl-3,4-Dihydro-1H-Pyrimido[4,5-D]Pyrimidin-2-One


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of P38 Kinase Crystal Structure in Complex with 3-(2,6- Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]- 1-Methyl-3,4-Dihydro-1H-Pyrimido[4,5-D]Pyrimidin-2-One within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl450

b:43.9
occ:1.00
CL35 A:FSS450 0.0 43.9 1.0
C19 A:FSS450 1.7 44.9 1.0
C18 A:FSS450 2.7 44.9 1.0
C14 A:FSS450 2.8 45.0 1.0
OD1 A:ASP168 3.1 48.2 1.0
N11 A:FSS450 3.1 46.5 1.0
CD1 A:ILE84 3.5 34.3 1.0
C10 A:FSS450 3.7 46.9 1.0
C12 A:FSS450 3.8 46.6 1.0
O34 A:FSS450 3.9 47.0 1.0
N A:ASP168 4.0 41.8 1.0
CG A:ASP168 4.0 46.9 1.0
C17 A:FSS450 4.1 44.8 1.0
C15 A:FSS450 4.1 44.6 1.0
CB A:LEU167 4.2 38.7 1.0
O A:HOH611 4.3 38.4 1.0
CD1 A:LEU167 4.4 40.3 1.0
CA A:ASP168 4.6 43.6 1.0
C16 A:FSS450 4.6 44.5 1.0
OD2 A:ASP168 4.7 47.8 1.0
N9 A:FSS450 4.7 47.4 1.0
C7 A:FSS450 4.8 47.2 1.0
CB A:ASP168 4.9 45.0 1.0
CG A:LEU167 4.9 39.1 1.0
CG1 A:ILE84 4.9 33.3 1.0
CA A:LEU167 5.0 37.9 1.0

Reference:

M.Soth, A.Kuglstatter, D.Goldstein. The Discovery of Pamapimod and R1487 As Orally Bioavailable and Highly Selective Inhibitors of P38 Map Kinase To Be Published.
Page generated: Sat Dec 12 09:42:25 2020

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