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Chlorine in PDB 3fvb: Crystal Structure of Ferritin (Bacterioferritin) From Brucella Melitensis

Protein crystallography data

The structure of Crystal Structure of Ferritin (Bacterioferritin) From Brucella Melitensis, PDB code: 3fvb was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.81
Space group F 2 3
Cell size a, b, c (Å), α, β, γ (°) 174.810, 174.810, 174.810, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 21.5

Other elements in 3fvb:

The structure of Crystal Structure of Ferritin (Bacterioferritin) From Brucella Melitensis also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms
Iron (Fe) 3 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Ferritin (Bacterioferritin) From Brucella Melitensis (pdb code 3fvb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Ferritin (Bacterioferritin) From Brucella Melitensis, PDB code: 3fvb:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3fvb

Go back to Chlorine Binding Sites List in 3fvb
Chlorine binding site 1 out of 3 in the Crystal Structure of Ferritin (Bacterioferritin) From Brucella Melitensis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Ferritin (Bacterioferritin) From Brucella Melitensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl169

b:34.5
occ:0.33
NZ A:LYS117 3.5 29.5 1.0
NH2 A:ARG105 3.6 22.1 1.0
O A:HOH373 3.7 50.5 1.0
CE A:LYS117 4.1 27.9 1.0
CD A:LYS117 4.6 25.3 1.0
MG A:MG167 4.7 57.5 0.3
CZ A:ARG105 4.7 23.0 1.0
O A:HOH174 4.8 42.4 1.0
NH1 A:ARG105 4.9 20.2 1.0
OD2 A:ASP121 4.9 30.6 1.0

Chlorine binding site 2 out of 3 in 3fvb

Go back to Chlorine Binding Sites List in 3fvb
Chlorine binding site 2 out of 3 in the Crystal Structure of Ferritin (Bacterioferritin) From Brucella Melitensis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Ferritin (Bacterioferritin) From Brucella Melitensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl170

b:22.0
occ:0.50
NA A:NA168 3.1 22.4 0.5
NH1 A:ARG148 3.4 25.1 1.0
CG A:ARG148 3.7 19.6 1.0
CD A:ARG148 3.8 20.7 1.0
OE1 A:GLN151 4.2 20.6 1.0
O A:HOH229 4.4 35.1 0.5
CZ A:ARG148 4.4 23.1 1.0
NE A:ARG148 4.5 22.7 1.0

Chlorine binding site 3 out of 3 in 3fvb

Go back to Chlorine Binding Sites List in 3fvb
Chlorine binding site 3 out of 3 in the Crystal Structure of Ferritin (Bacterioferritin) From Brucella Melitensis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Ferritin (Bacterioferritin) From Brucella Melitensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl166

b:36.1
occ:0.33
NH2 B:ARG105 3.5 23.0 1.0
NZ B:LYS117 3.6 29.2 1.0
O B:HOH348 3.8 49.4 1.0
CE B:LYS117 4.1 26.7 1.0
O B:HOH318 4.6 42.2 1.0
CZ B:ARG105 4.6 24.2 1.0
CD B:LYS117 4.6 24.6 1.0
NH1 B:ARG105 4.8 21.9 1.0
OD2 B:ASP121 4.9 30.3 1.0

Reference:

Seattle Structural Genomics Center For Infectious Disease(Ssgcid), Seattle Structural Genomics Center For Infectious Disease (Ssgcid). N/A N/A.
Page generated: Sat Dec 12 09:42:36 2020

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