Chlorine in PDB 3g16: Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution
Protein crystallography data
The structure of Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution, PDB code: 3g16
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
27.97 /
1.45
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
48.560,
68.450,
107.460,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
14.8 /
16.7
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution
(pdb code 3g16). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution, PDB code: 3g16:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 3g16
Go back to
Chlorine Binding Sites List in 3g16
Chlorine binding site 1 out
of 4 in the Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl157
b:27.9
occ:1.00
|
N
|
A:VAL148
|
3.1
|
16.2
|
1.0
|
NE
|
A:ARG147
|
3.2
|
30.7
|
1.0
|
N
|
A:THR149
|
3.5
|
16.6
|
1.0
|
CD
|
A:ARG147
|
3.6
|
28.9
|
1.0
|
CA
|
A:ARG147
|
3.8
|
17.7
|
1.0
|
OG1
|
A:THR149
|
3.8
|
24.2
|
1.0
|
CA
|
A:VAL148
|
3.9
|
17.9
|
1.0
|
C
|
A:ARG147
|
3.9
|
16.8
|
1.0
|
CZ
|
A:ARG147
|
4.0
|
31.8
|
1.0
|
O
|
A:THR149
|
4.0
|
16.2
|
1.0
|
CB
|
A:VAL148
|
4.0
|
20.6
|
1.0
|
C
|
A:VAL148
|
4.2
|
18.5
|
1.0
|
NH2
|
A:ARG147
|
4.3
|
32.4
|
1.0
|
CB
|
A:ARG147
|
4.3
|
22.6
|
1.0
|
CA
|
A:THR149
|
4.5
|
18.2
|
1.0
|
CG
|
A:ARG147
|
4.6
|
27.2
|
1.0
|
C
|
A:THR149
|
4.7
|
15.4
|
1.0
|
CB
|
A:THR149
|
4.7
|
21.5
|
1.0
|
O
|
A:TYR146
|
4.7
|
16.9
|
1.0
|
CG2
|
A:VAL148
|
4.8
|
21.9
|
1.0
|
O
|
A:HOH360
|
4.9
|
26.3
|
1.0
|
NH1
|
A:ARG147
|
5.0
|
32.1
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 3g16
Go back to
Chlorine Binding Sites List in 3g16
Chlorine binding site 2 out
of 4 in the Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl158
b:20.6
occ:1.00
|
O2
|
A:GOL161
|
2.9
|
38.9
|
1.0
|
O
|
B:HOH173
|
3.1
|
15.9
|
1.0
|
N
|
A:SER150
|
3.3
|
15.1
|
1.0
|
NZ
|
A:LYS153
|
3.3
|
17.9
|
1.0
|
C2
|
A:GOL161
|
3.6
|
40.9
|
1.0
|
CA
|
A:THR149
|
3.8
|
18.2
|
1.0
|
CB
|
A:SER150
|
3.9
|
13.1
|
1.0
|
CE
|
A:LYS153
|
3.9
|
16.8
|
1.0
|
CD
|
A:LYS153
|
3.9
|
15.6
|
1.0
|
CB
|
A:THR149
|
4.0
|
21.5
|
1.0
|
C
|
A:THR149
|
4.0
|
15.4
|
1.0
|
O3
|
A:GOL161
|
4.2
|
43.1
|
1.0
|
CA
|
A:SER150
|
4.2
|
13.7
|
1.0
|
CG2
|
A:THR149
|
4.4
|
22.1
|
1.0
|
CG2
|
B:VAL100
|
4.4
|
16.9
|
1.0
|
CD1
|
B:PHE93
|
4.4
|
14.5
|
1.0
|
C3
|
A:GOL161
|
4.5
|
41.8
|
1.0
|
C1
|
A:GOL161
|
4.8
|
40.3
|
1.0
|
O
|
A:VAL148
|
4.8
|
19.2
|
1.0
|
CA
|
B:ASP98
|
4.9
|
16.4
|
1.0
|
CE1
|
B:PHE93
|
4.9
|
15.2
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 3g16
Go back to
Chlorine Binding Sites List in 3g16
Chlorine binding site 3 out
of 4 in the Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl159
b:29.4
occ:1.00
|
O
|
A:HOH204
|
3.1
|
21.9
|
1.0
|
O
|
A:HOH347
|
3.2
|
51.8
|
1.0
|
N
|
A:ARG8
|
3.2
|
16.1
|
1.0
|
CA
|
A:SER7
|
3.7
|
15.0
|
1.0
|
CG
|
A:ARG8
|
3.7
|
17.3
|
0.2
|
CB
|
A:SER7
|
3.8
|
16.4
|
1.0
|
NH1
|
A:ARG8
|
3.9
|
20.5
|
0.2
|
C
|
A:SER7
|
4.0
|
15.8
|
1.0
|
CB
|
A:ARG8
|
4.0
|
17.1
|
0.2
|
CB
|
A:ARG8
|
4.0
|
16.5
|
0.2
|
CG
|
A:ARG8
|
4.0
|
22.6
|
0.5
|
CB
|
A:ARG8
|
4.2
|
20.7
|
0.5
|
CA
|
A:ARG8
|
4.2
|
15.9
|
0.2
|
CA
|
A:ARG8
|
4.2
|
16.4
|
0.2
|
CA
|
A:ARG8
|
4.3
|
17.8
|
0.5
|
CZ
|
A:ARG8
|
4.4
|
19.6
|
0.2
|
CD
|
A:ARG8
|
4.6
|
18.7
|
0.2
|
NE
|
A:ARG8
|
4.7
|
19.2
|
0.2
|
O
|
A:HOH346
|
4.9
|
54.4
|
1.0
|
CB
|
A:ALA81
|
4.9
|
16.3
|
1.0
|
CD
|
A:ARG8
|
5.0
|
22.5
|
0.5
|
OG
|
A:SER7
|
5.0
|
15.1
|
1.0
|
N
|
A:SER7
|
5.0
|
14.1
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 3g16
Go back to
Chlorine Binding Sites List in 3g16
Chlorine binding site 4 out
of 4 in the Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl157
b:23.8
occ:1.00
|
O
|
B:HOH247
|
3.1
|
21.1
|
1.0
|
O
|
B:HOH332
|
3.1
|
33.2
|
1.0
|
N
|
B:VAL148
|
3.1
|
17.1
|
1.0
|
N
|
B:THR149
|
3.5
|
15.9
|
1.0
|
CA
|
B:ARG147
|
3.7
|
21.1
|
1.0
|
CG1
|
B:VAL148
|
3.9
|
16.3
|
0.5
|
C
|
B:ARG147
|
3.9
|
17.6
|
1.0
|
CB
|
B:ARG147
|
4.0
|
24.0
|
1.0
|
CA
|
B:VAL148
|
4.0
|
17.7
|
0.5
|
CA
|
B:VAL148
|
4.1
|
18.1
|
0.5
|
O
|
B:THR149
|
4.1
|
16.0
|
1.0
|
C
|
B:VAL148
|
4.2
|
18.8
|
1.0
|
CB
|
B:VAL148
|
4.2
|
17.8
|
0.5
|
CB
|
B:THR149
|
4.2
|
17.8
|
1.0
|
CA
|
B:THR149
|
4.3
|
17.0
|
1.0
|
CB
|
B:VAL148
|
4.5
|
18.3
|
0.5
|
OG1
|
B:THR149
|
4.5
|
20.4
|
1.0
|
C
|
B:THR149
|
4.7
|
15.8
|
1.0
|
CD
|
B:ARG147
|
4.7
|
25.2
|
1.0
|
CG
|
B:ARG147
|
4.8
|
26.5
|
1.0
|
O
|
B:TYR146
|
4.9
|
20.5
|
1.0
|
O
|
B:HOH261
|
4.9
|
45.5
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Sat Jul 20 19:55:16 2024
|